SCN Proteipedia

Hg_chrom9_TN10mRNA_17178

Organism: Heterodera glycines Gene Locus: chr9:3261605-3293986 Feature type: polypeptide

Protein Sequence

Length: 3,223 (Signal peptide: 1-30)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.844	0.678	1.14	1.594	1.293	1.599	0.99	1.334	0.765	0.826	0.597	0.438	0.724	1.641	1.399	0.918	0.829	0.997	0.931	0.721	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16229	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	—	—	—	8-Eggs_J4_Males	0.990

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	—	extracellular	nucleus	KRRR,PKPS,RRQQQQKQTKTEEKEQRR,KRAEAEERAAIAQQQRPRR,QRMRRLRRLRQQRRRATSHRKRTQHKEEEEEGKKKQRKRKRTEHAQHKRKKSIAEVRKENLRRRAERY	—	—	—	—	1-30	0.789	0.929	0.000	0.000	0.262	0.161	0.009	0.393	0.062	0.036	0.102	0.051	0.363	0.821

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000937	2.000	4.000	Hsc_gene_18887.t1;Hsc_gene_18887.t2;Hsc_gene_18887.t3;Hsc_gene_18887.t4	Hsc_gene_18887.t1;Hsc_gene_18887.t2;Hsc_gene_18887.t3;Hsc_gene_18887.t4;Hsc_gene_18889.t1;Hsc_gene_18890.t1;Hsc_gene_18892.t1;Hsc_gene_18893.t1	—	Q06561.2 Basement membrane proteoglycan [Caenorhabditis elegans]	KAI6211625.1 Basement membrane proteoglycan [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.909\|GO:0110165_0.905\|GO:0008150_0.859\|GO:0071944_0.798\|GO:0009987_0.784\|GO:0032502_0.770\|GO:0048856_0.768\|GO:0032501_0.733\|GO:0007275_0.698\|GO:0003674_0.689\|GO:0048731_0.671\|GO:0065007_0.648\|GO:0005622_0.642\|GO:0050789_0.639\|GO:0030312_0.633\|GO:0031012_0.633\|GO:0062023_0.633\|GO:0030154_0.628\|GO:0048869_0.628\|GO:0048513_0.621\|GO:0043226_0.606\|GO:0009653_0.588\|GO:0043229_0.567\|GO:0050794_0.547\|GO:0016043_0.536\|GO:0071840_0.536\|GO:0050896_0.528\|GO:0016020_0.525	IPR000034+1004-1179_1039-1166_1044-1178_1296-1470_1334-1458_1339-1469+\|IPR000742+1209-1250_1471-1482_1505-1552_1565-1605_1610-1645+\|IPR002049+930-976_931-976_947-981_1179-1198_1179-1201_1180-1267_1222-1267_1238-1272_1470-1491_1504-1551_1504-1552_1504-1553_1563-1606_1564-1607_1564-1611_1564-1613_1580-1616_1614-1662_1614-1663+\|IPR002172+202-245_202-246_208-244_260-298_260-299_261-297_322-360_322-361_322-362_323-360_336-357_473-509_473-510_473-511_474-509_542-581_542-582_543-580_547-580_556-577_693-729_693-730_694-728_704-725_733-769_733-770_734-768_744-765_776-813_776-814_777-812_788-809+\|IPR003598+601-665_828-895_1696-1761_1811-1874_1922-1984_2029-2085_2127-2189_2219-2282_2324-2387_2417-2481_2500-2568_2598-2664_2697-2769_2862-2924_2953-3014+\|IPR003599+595-676_822-906_1690-1772_1805-1886_1916-2002_2013-2103_2121-2203_2213-2297_2318-2399_2411-2492_2494-2579_2592-2674_2691-2782_2856-2937_2947-3025+\|IPR007110+586-674_815-899_1679-1770_1799-1884_1908-1993_2006-2094_2117-2199_2205-2275_2312-2399_2405-2494_2502-2571_2581-2667_2681-2847_2862-2927_2937-3023+\|IPR013098+815-897_2409-2485_2494-2577+\|IPR013151+1809-1874_2865-2926_2950-3015+\|IPR013783+584-677_815-920_1677-1772_1802-1892_1903-1991_2111-2192_2201-2288_2311-2402_2403-2488_2489-2581_2585-2674_2685-2785_2852-2934_2941-3036+\|IPR023415+338-360_487-509_746-768_790-812+\|IPR036055+198-252_202-233_257-297_257-301_318-366_319-360_471-511_473-512_540-583_545-581_690-731_691-729_732-768_732-775_776-814_776-817+\|IPR036179+591-682_814-900_1687-1770_1799-1889_1908-2085_2119-2203_2210-2300_2310-2399_2403-2485_2497-2582_2593-2781_2865-2930_2946-3025+\|IPR050958+2311-2485+	SM00180+930-976_1180-1267_1504-1551_1564-1611_1614-1662+\|SM00181+1209-1250_1505-1552_1565-1605_1610-1645+\|SM00192+202-246_260-299_322-362_473-511_542-582_693-730_733-770_776-814+\|SM00281+1039-1166_1334-1458+\|SM00408+601-665_828-895_1696-1761_1811-1874_1922-1984_2029-2085_2127-2189_2219-2282_2324-2387_2417-2481_2500-2568_2598-2664_2697-2769_2862-2924_2953-3014+\|SM00409+595-676_822-906_1690-1772_1805-1886_1916-2002_2013-2103_2121-2203_2213-2297_2318-2399_2411-2492_2494-2579_2592-2674_2691-2782_2856-2937_2947-3025+	PF00047+1809-1874_2865-2926_2950-3015+Immunoglobulin_domain\|PF00052+1044-1178_1339-1469+Laminin_B_(Domain_IV)\|PF00053+931-976_1179-1201_1222-1267_1470-1491_1504-1551_1564-1607_1614-1662+Laminin_EGF_domain\|PF00057+322-360_473-509_543-580_694-728_734-768_777-812+Low-density_lipoprotein_receptor_domain_class_A\|PF07679+815-897_2409-2485_2494-2577+Immunoglobulin_I-set_domain\|PF13927+590-660_1688-1755+Immunoglobulin_domain	G3DSA:2.10.25.10:FF:000106+1481-1557+Heparan_sulfate_proteoglycan_2\|G3DSA:2.10.25.10:FF:000552+1563-1611+Basement_membrane_proteoglycan\|G3DSA:2.60.40.10:FF:000032+811-909+palladin_isoform_X1\|G3DSA:4.10.400.10:FF:000062+732-770+Terribly_reduced_optic_lobes,_isoform_AI	PTHR45080+2311-2485+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	36-157;361-465;1773-1816;1967-2543;3010-3223	5.000	1-35;158-360;466-1772;1817-1966;2544-3009	9i5b_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.619	354650.820	5.290	-61.000	27.490	8.936	48.123	51.877	13.466	14.024	55.973

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	6039.558	11048.464	8617.533	4905.172	3339.474	14163.312	4988.848	12332.078	2014.939	2638.782	2371.421

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.588	-1.309	-0.705	-0.586	2.098	-1.495	-0.306	-1.163	—	—	—	—	—

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