Hg_chrom9_TN10mRNA_17185
Organism: Heterodera glycines Gene Locus: chr9:3304805-3317596 Feature type: polypeptideProtein Sequence
Length: 2,523
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 0.719 | 0.778 | 0.943 | 0.991 | 1.545 | 0.623 | 1.447 | 0.881 | 1.676 | 0.426 | 1.422 | 1.046 | 1.204 | 1.351 | 1.257 | 0.786 | 0.937 | 1.067 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16234
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
PKPS,AAAED,KRDQAQQLQRMRHRRG
|
27-49
|
0.987
|
22-58
|
0.998
|
— | — |
0.000
|
— | — |
0.441
|
0.124
|
0.013
|
0.494
|
0.215
|
0.418
|
0.256
|
0.059
|
0.187
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000938
|
1.000
|
5.000
|
Hsc_gene_18883.t1;Hsc_gene_18883.t2;Hsc_gene_18883.t3;Hsc_gene_18883.t4;Hsc_gene_18883.t5
|
Hsc_gene_18883.t1;Hsc_gene_18883.t2;Hsc_gene_18883.t3;Hsc_gene_18883.t4;Hsc_gene_18883.t5
|
— |
P42173.3 Uncoordinated protein 79 [Caenorhabditis elegans]
|
KAI6188506.1 Uncoordinated protein 79 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.759|GO:0005575_0.745|GO:0110165_0.741|GO:0016020_0.660|GO:0071944_0.633|GO:0005886_0.628|GO:0050896_0.622|GO:0042221_0.513
|
IPR016024+1016-1994+|IPR024855+1837-2523+
|
— |
PF14776+95-608+Cation-channel_complex_subunit_UNC-79
|
— |
PTHR21696+1837-2523+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
681-751;857-990;1293-1420;1681-1855;2175-2220
|
6.000
|
1-680;752-856;991-1292;1421-1680;1856-2174;2221-2523
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
279674.540
|
6.880
|
16.500
|
22.553
|
9.512
|
45.264
|
54.736
|
12.327
|
10.226
|
50.297
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2200.620
|
7659.189
|
4907.185
|
2362.218
|
1045.045
|
541.675
|
845.026
|
1297.098
|
359.681
|
2361.415
|
1503.529
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.872
|
-1.834
|
-0.946
|
-1.208
|
-0.934
|
0.652
|
1.156
|
-0.476
|
— | — | — | — | — |
No JSON data available for plots.