SCN Proteipedia

Hg_chrom9_TN10mRNA_17188

Organism: Heterodera glycines Gene Locus: chr9:3325975-3331389 Feature type: polypeptide

Protein Sequence

Length: 777

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.778	1.407	0.819	0.754	1.48	1.716	0.889	1.995	0.601	1.009	0.722	1.741	1.001	1.114	1.366	1.305	0.717	0.527	0.297	0.644	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16237	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.521

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRNKHRVFSCRKCKL	—	—	—	—	—	—	0.000	—	—	0.915	0.051	0.017	0.285	0.024	0.030	0.016	0.011	0.075	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012731	1.000	1.000	Hsc_gene_18880.t1	Hsc_gene_18880.t1	—	Q91X45.3 Zinc finger and BTB domain-containing protein 3 [Mus musculus]	KAI1723127.1 zinc finger protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.962\|GO:0065007_0.931\|GO:0050789_0.919\|GO:0009987_0.918\|GO:0050794_0.913\|GO:0008152_0.867\|GO:0019222_0.867\|GO:0031323_0.867\|GO:0044237_0.867\|GO:0043170_0.863\|GO:0009058_0.856\|GO:0009059_0.856\|GO:0044249_0.856\|GO:0060255_0.855\|GO:0010467_0.853\|GO:0044238_0.851\|GO:0080090_0.848\|GO:0009889_0.847\|GO:0031326_0.847\|GO:0006139_0.843\|GO:0010556_0.842\|GO:0034654_0.842\|GO:0016070_0.840\|GO:0090304_0.840\|GO:0141187_0.839\|GO:0010468_0.838\|GO:0032774_0.838\|GO:0019219_0.821\|GO:0051252_0.821\|GO:0005575_0.815\|GO:0006351_0.803\|GO:0110165_0.800\|GO:2001141_0.800\|GO:0006355_0.795\|GO:0005622_0.776\|GO:0043226_0.745\|GO:0043229_0.737\|GO:0048518_0.708\|GO:0048522_0.698\|GO:0003674_0.689\|GO:0005488_0.674\|GO:0009893_0.669\|GO:0031325_0.664\|GO:0009891_0.662\|GO:0010604_0.661\|GO:0031328_0.660\|GO:0010557_0.646\|GO:0006366_0.644\|GO:0006357_0.643\|GO:0045935_0.635\|GO:0051254_0.633\|GO:0016020_0.630\|GO:0003676_0.622\|GO:0097159_0.622\|GO:0045893_0.619\|GO:1902680_0.619\|GO:0005634_0.609\|GO:0043227_0.609\|GO:0043231_0.609\|GO:0043228_0.553\|GO:0043232_0.553\|GO:0003677_0.552\|GO:0043565_0.547\|GO:0003690_0.537\|GO:1990837_0.537\|GO:0000976_0.518\|GO:0001067_0.518\|GO:0140110_0.506	IPR013087+257-279_257-284_509-531_509-536_511-531_539-561_539-566_540-561_567-593+\|IPR036236+255-303_535-585+	SM00355+257-279_509-531_539-561_567-593+	—	—	PTHR24376+256-587+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-248;317-434;615-777	2.000	249-316;435-614	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.772	86932.350	6.531	0.500	28.829	10.167	55.084	44.916	15.444	13.385	49.678

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	845.902	809.265	408.786	398.517	426.786	2710.305	910.472	1427.246	1034.167	265.929	595.174

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.215	-1.159	—	—	2.682	-1.565	-1.050	—	—	—	—	—	—

No JSON data available for plots.

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