Hg_chrom9_TN10mRNA_17189
Organism: Heterodera glycines Gene Locus: chr9:3337020-3340115 Feature type: polypeptideProtein Sequence
Length: 644
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.156 | 0.819 | 0.75 | 1.32 | 1.035 | 0.739 | 1.009 | 1.208 | 1.427 | 1.106 | 0.913 | 1.467 | 0.896 | 1.141 | 0.865 | 0.738 | 1.035 | 0.597 | 1.005 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16238
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KVKK,KRSSEDLVANFKRMKE
|
— | — |
3-24
|
0.983
|
— | — |
0.000
|
— | — |
0.413
|
0.223
|
0.065
|
0.714
|
0.189
|
0.171
|
0.193
|
0.023
|
0.106
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012732
|
1.000
|
1.000
|
Hsc_gene_18879.t1
|
Hsc_gene_18879.t1
|
— |
Q9SYM5.1 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Arabidopsis thaliana]
|
KAI1727535.1 GDP-mannose 4,6 dehydratase domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.825|GO:0008150_0.813|GO:0005575_0.730|GO:0110165_0.728|GO:0009987_0.670|GO:0003824_0.667|GO:0005622_0.618|GO:0008152_0.612|GO:0044238_0.592|GO:0044237_0.533|GO:0016020_0.528|GO:0005737_0.516
|
IPR016040+21-333+|IPR036291+13-342_351-590+
|
— |
PF16363+21-333+GDP-mannose_4,6_dehydratase
|
— |
PTHR43000+15-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-644
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
73017.850
|
7.870
|
9.500
|
27.329
|
11.491
|
46.894
|
53.106
|
14.907
|
12.422
|
46.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
536.138
|
787.771
|
637.797
|
979.147
|
984.298
|
1032.607
|
635.192
|
515.984
|
35.032
|
229.533
|
146.175
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.533
|
0.177
|
0.727
|
— | — |
-0.691
|
-1.106
|
0.443
|
— |
4.993
|
— | — | — |
No JSON data available for plots.