Hg_chrom9_TN10mRNA_17190
Organism: Heterodera glycines Gene Locus: chr9:3340841-3342042 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.64 | 1.209 | 0.612 | 0.844 | 1.886 | 1.176 | 0.692 | 1.223 | 0.815 | 0.95 | 1.9 | 1.259 | 1.274 | 0.647 | 1.498 | 1.354 | 0.802 | 0.51 | 0.235 | 0.18 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16239
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
chloroplast
|
RRFTALGRGRKRKRN.,KKEKGKEKKKKKKSDKK,KKEQGEAEVRRAKRKSD,KKVKTLVNMLNVRRKPIK,KKEKPKKNKEKKEKGKEKK,KKNKEKKEKGKEKKKKKKS,KKKKSDKKEQGEAEVRRAK,KKKSDKKEQGEAEVRRAKR,KKSDKKEQGEAEVRRAKRK
|
— | — |
1-81
|
0.996
|
— |
0.979
|
0.085
|
0.000
|
— |
0.363
|
0.155
|
0.050
|
0.233
|
0.099
|
0.032
|
0.076
|
0.004
|
0.107
|
0.732
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012733
|
1.000
|
1.000
|
Hsc_gene_18878.t1
|
Hsc_gene_18878.t1
|
— | — |
KAI1729527.1 ground-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007284+213-281+
|
— |
PF04155+213-281+Ground-like_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
49-245;327-327
|
2.000
|
1-48;246-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
37287.260
|
10.119
|
21.000
|
37.003
|
7.951
|
61.162
|
38.838
|
22.324
|
14.679
|
43.425
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
300.020
|
285.253
|
99.899
|
96.652
|
107.626
|
299.881
|
84.900
|
106.378
|
10.314
|
899.630
|
518.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.744
|
-1.698
|
— | — |
1.495
|
-1.813
|
-1.608
|
— |
-6.556
|
— | — | — | — |