Hg_chrom9_TN10mRNA_17192
Organism: Heterodera glycines Gene Locus: chr9:3346932-3351397 Feature type: polypeptideProtein Sequence
Length: 872
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 1.147 | 0.938 | 0.633 | 0.516 | 1.411 | 0.956 | 1.032 | 1.3 | 1.379 | 0.504 | 1.214 | 0.605 | 1.367 | 1.287 | 1.081 | 0.996 | 1.182 | 0.176 | 0.708 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16241
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRAR
|
4-55
|
0.976
|
23-114
|
0.951
|
— | — |
0.000
|
— | — |
0.082
|
0.132
|
0.106
|
0.292
|
0.113
|
0.298
|
0.216
|
0.104
|
0.268
|
0.903
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012735
|
1.000
|
1.000
|
Hsc_gene_18876.t1
|
Hsc_gene_18876.t1
|
— | — |
KAI1724710.1 lipopolysaccharide-binding protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
— |
IPR001124+606-858_611-855+|IPR017942+156-384_163-332+|IPR017943+150-361_591-859+|IPR032942+136-864+
|
SM00328+156-384+|SM00329+611-855+
|
PF01273+163-332+LBP_/_BPI_/_CETP_family,_N-terminal_domain|PF02886+606-858+LBP_/_BPI_/_CETP_family,_C-terminal_domain
|
— |
PTHR10504+136-864+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
45-137;393-540;867-872
|
3.000
|
1-44;138-392;541-866
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
93944.530
|
8.728
|
21.000
|
19.954
|
6.881
|
44.037
|
55.963
|
11.697
|
8.257
|
56.766
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
3931.406
|
1321.900
|
4049.514
|
2228.308
|
8195.266
|
21148.813
|
1952.236
|
2801.023
|
48.914
|
1526.820
|
893.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.387
|
0.616
|
-0.754
|
1.847
|
1.383
|
-3.429
|
-3.026
|
-0.378
|
-5.086
|
5.724
|
— | — | — |
No JSON data available for plots.