Hg_chrom9_TN10mRNA_17203
Organism: Heterodera glycines Gene Locus: chr9:3406709-3409527 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.074 | 1.037 | 0.811 | 0.549 | 0.69 | 0.408 | 0.986 | 0.478 | 1.345 | 1.463 | 0.676 | 2.061 | 1.858 | 0.551 | 1.17 | 0.682 | 0.731 | 1.689 | 0.98 | 1.03 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16251
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.805
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KRVK
|
32-59
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.122
|
0.222
|
0.033
|
0.293
|
0.681
|
0.364
|
0.404
|
0.023
|
0.262
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012742
|
1.000
|
1.000
|
Hsc_gene_18864.t1
|
Hsc_gene_18864.t1
|
— |
A5JYX5.1 Protein dhs-3 [Caenorhabditis elegans]
|
KAI1703383.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.883|GO:0005575_0.683|GO:0110165_0.683|GO:0009987_0.638|GO:0003674_0.636|GO:0008152_0.633|GO:0044238_0.590|GO:0003824_0.550|GO:0005622_0.522
|
IPR002347+43-235_44-61_118-129_165-181_171-179_191-210_214-231+|IPR020904+178-206+|IPR036291+38-294+
|
— |
PF00106+43-235+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000131+33-294+Short-chain_dehydrogenase/reductase_3
|
PTHR24322+26-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-314
|
1yb1_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
34759.830
|
8.816
|
6.500
|
19.745
|
12.420
|
35.032
|
64.968
|
11.146
|
8.599
|
51.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
523.696
|
791.619
|
595.768
|
284.081
|
489.895
|
1130.317
|
1087.329
|
1209.944
|
33.369
|
170.287
|
111.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.640
|
-1.616
|
-0.960
|
0.755
|
1.220
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.