Hg_chrom9_TN10mRNA_17204
Organism: Heterodera glycines Gene Locus: chr9:3418004-3419358 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.477 | 1.015 | 1.082 | 0.958 | 0.661 | 0.916 | 0.567 | 0.595 | 0.97 | 1.502 | 0.782 | 1.867 | 1.213 | 1.45 | 0.324 | 0.737 | 1.171 | 1.022 | 0.611 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16252
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.246
|
0.725
|
0.280
|
0.251
|
0.172
|
0.091
|
0.055
|
0.054
|
0.222
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000191
|
7.000
|
4.000
|
Hsc_gene_10633.t1;Hsc_gene_10640.t1;Hsc_gene_10723.t2;Hsc_gene_10724.t2
|
Hsc_gene_10633.t1;Hsc_gene_10633.t2;Hsc_gene_10640.t1;Hsc_gene_10663.t1;Hsc_gene_10723.t1;Hsc_gene_10723.t2;Hsc_gene_10723.t3;Hsc_gene_10724.t1;Hsc_gene_10724.t2;Hsc_gene_23976.t1
|
— | — |
KAH7727707.1 TspO/MBR family protein [Aphelenchus avenae]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.950|GO:0005575_0.898|GO:0009987_0.895|GO:0110165_0.889|GO:0051179_0.799|GO:0051234_0.787|GO:0006810_0.786|GO:0016020_0.659|GO:0003674_0.657|GO:0071944_0.639|GO:0005886_0.622|GO:0005622_0.575|GO:0043226_0.538|GO:0043227_0.516|GO:0032501_0.514
|
IPR004307+9-164_18-161_69-154+|IPR038330+8-164+
|
— |
PF03073+18-161+TspO/MBR_family
|
— |
PTHR10057+9-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
213-252
|
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
27232.460
|
4.595
|
-6.500
|
17.857
|
9.921
|
38.095
|
61.905
|
7.937
|
9.921
|
57.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
63.577
|
11.990
|
33.142
|
59.232
|
58.400
|
27.963
|
89.711
|
19.613
|
0.000
|
165.630
|
94.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.233
|
2.166
|
0.951
|
— |
-1.047
|
1.692
|
-0.616
|
2.337
|
-8.164
|
6.745
|
— | — | — |
No JSON data available for plots.