Hg_chrom9_TN10mRNA_17207
Organism: Heterodera glycines Gene Locus: chr9:3423327-3426594 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.077 | 0.606 | 1.149 | 0.525 | 0.522 | 0.397 | 0.833 | 1.317 | 1.151 | 0.758 | 1.852 | 2.315 | 1.389 | 1.209 | 1.164 | 1.184 | 0.814 | 2.279 | 1.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16255
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
PITKRLK
|
— | — |
39-78
|
0.999
|
— | — |
0.000
|
— | — |
0.071
|
0.067
|
0.046
|
0.159
|
0.196
|
0.205
|
0.348
|
0.014
|
0.673
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004928
|
2.000
|
1.000
|
Hsc_gene_18861.t1
|
Hsc_gene_18861.t1
|
— |
Q21005.2 Acetylcholine-gated chloride channel subunit acc-1 [Caenorhabditis elegans]
|
KAI1723620.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.962|GO:0009987_0.918|GO:0005575_0.861|GO:0110165_0.861|GO:0016020_0.786|GO:0003674_0.783|GO:0006810_0.727|GO:0051179_0.727|GO:0051234_0.727|GO:0065007_0.726|GO:0071944_0.712|GO:0050789_0.704|GO:0005886_0.687|GO:0055085_0.673|GO:0007154_0.654|GO:0023052_0.651|GO:0006811_0.650|GO:0034220_0.627|GO:0005215_0.623|GO:0022857_0.623|GO:0050794_0.607|GO:0015267_0.597|GO:0022803_0.597|GO:0015075_0.592|GO:0005216_0.585|GO:0032501_0.578|GO:0050896_0.572|GO:0007267_0.567|GO:0022836_0.565|GO:0098660_0.555|GO:0015276_0.554|GO:0022834_0.554|GO:0007268_0.538|GO:0030054_0.538|GO:0045202_0.538|GO:0098916_0.538|GO:0099536_0.538|GO:0099537_0.538|GO:0015698_0.535|GO:0006820_0.534|GO:0006821_0.531|GO:0051716_0.521|GO:0015318_0.519|GO:0005230_0.515|GO:0098661_0.508|GO:0098656_0.503|GO:1902476_0.501
|
IPR006028+393-413_419-440_453-474_512-532+|IPR006029+400-479+|IPR006201+192-481_228-244_263-274_309-323_384-396+|IPR006202+188-390+|IPR018000+309-323+|IPR036719+390-536+|IPR036734+173-387_186-389+|IPR038050+388-540+
|
— |
PF02931+188-390+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+400-479+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000061+387-539+Ligand-Gated_ion_Channel
|
PTHR18945+192-481+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-540
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
62644.010
|
9.520
|
28.500
|
19.074
|
17.593
|
41.111
|
58.889
|
12.593
|
6.481
|
48.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
670.907
|
894.529
|
1273.228
|
523.287
|
177.113
|
97.112
|
155.022
|
1032.673
|
1274.075
|
422.301
|
787.347
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.280
|
-0.911
|
-1.174
|
-1.593
|
-0.854
|
0.684
|
3.312
|
-2.596
|
— | — | — | — | — |
No JSON data available for plots.