Hg_chrom9_TN10mRNA_17208
Organism: Heterodera glycines Gene Locus: chr9:3426832-3429832 Feature type: polypeptideProtein Sequence
Length: 663
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 1.824 | 1.179 | 0.624 | 1.885 | 1.392 | 2.083 | 0.603 | 0.302 | 0.285 | 1.303 | 1.597 | 0.628 | 0.435 | 1.908 | 0.603 | 0.767 | 0.251 | 0.464 | 0.799 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16256
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18860
|
— |
7-ppJ2
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
extracellular
|
— |
RKRTRKNKNKKKKSE,RKKSNGTKKRKKTKT,KKRKKTKTNGERKSKT,KRRKNDQRSSGKRKREQ,KKRKKKAEKEMTKSEKK,RKNGRRSSGTRAKRRKND,RRKMATTKRRKTARRERE,KKKKSEGTATTQHKKRKKK,KKKSEGTATTQHKKRKKKA,KKSEGTATTQHKKRKKKAE,KKTTAHRKKSNGTKKRKKT,RKSKTDQQQKRKKKKRTRA,ESARRKMATTKRRKTARRER
|
— | — | — | — | — | — |
0.004
|
— | — |
0.421
|
0.055
|
0.014
|
0.256
|
0.039
|
0.008
|
0.088
|
0.021
|
0.135
|
0.833
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012745
|
1.000
|
1.000
|
Hsc_gene_18860.t1
|
Hsc_gene_18859.t1;Hsc_gene_18860.t1
|
— | — | — |
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+553-589_553-590_609-645_609-646_610-645+
|
SM00254+553-590_609-646+
|
PF01549+553-589_609-645+ShK_domain-like
|
— |
PTHR46219+533-647+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
119-553
|
2.000
|
1-118;554-663
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
72884.490
|
7.522
|
5.000
|
36.953
|
6.787
|
59.125
|
40.875
|
19.155
|
17.798
|
52.338
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
1185.920
|
608.617
|
769.216
|
337.952
|
91.781
|
29.758
|
47.153
|
190.182
|
4967.380
|
684.868
|
2520.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.986
|
-1.077
|
-1.911
|
-1.610
|
0.675
|
2.574
|
-1.870
|
2.725
|
-3.693
|
-2.653
|
— | — |
No JSON data available for plots.