Hg_chrom9_TN10mRNA_17209
Organism: Heterodera glycines Gene Locus: chr9:3430214-3431670 Feature type: polypeptideProtein Sequence
Length: 201
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.041 | 1.719 | 1.544 | 1.41 | 0.383 | 0.533 | 1.741 | 0.553 | 1.614 | 1.206 | 1.171 | 1.52 | 0.765 | 1.32 | 0.569 | 0.734 | 1.206 | 0.383 | 0.585 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16257
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18858
|
— |
4-Not_Clustered
|
0.510
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KLKKKK
|
— | — | — | — |
1-20
|
0.995
|
1.000
|
0.000
|
0.000
|
0.158
|
0.304
|
0.075
|
0.300
|
0.294
|
0.099
|
0.240
|
0.042
|
0.364
|
0.770
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012746
|
1.000
|
1.000
|
Hsc_gene_18858.t1
|
Hsc_gene_18858.t1
|
— | — |
KAH7704056.1 Protein Y53H1B.2 [Aphelenchus avenae];KAH7704580.1 Protein Y53H1B.2 [Aphelenchus avenae]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR032675+23-164+
|
— | — | — |
PTHR39385+3-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
201-201
|
1.000
|
1-200
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
23167.500
|
5.626
|
-3.500
|
35.821
|
11.443
|
50.249
|
49.751
|
17.910
|
17.910
|
47.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
4476.109
|
6852.949
|
1958.951
|
2182.939
|
2285.789
|
4066.660
|
2205.474
|
14228.360
|
1909.373
|
5483.028
|
3951.462
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.035
|
-1.788
|
0.264
|
— |
0.846
|
-0.873
|
1.710
|
-2.550
|
-1.639
|
— | — | — | — |