Hg_chrom9_TN10mRNA_17210
Organism: Heterodera glycines Gene Locus: chr9:3431823-3433124 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 0.66 | 1.319 | 0.653 | 0.683 | 1.052 | 0.864 | 1.262 | 1.542 | 1.194 | 0.86 | 1.485 | 1.227 | 0.789 | 1.159 | 1.082 | 0.879 | 1.099 | 0.243 | 0.649 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16258
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.674
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.626
|
0.322
|
0.031
|
0.635
|
0.147
|
0.220
|
0.199
|
0.121
|
0.069
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004272
|
2.000
|
1.000
|
Hsc_gene_18857.t1
|
Hsc_gene_18857.t1
|
— |
P32740.3 ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Caenorhabditis elegans]
|
KAF7639632.1 ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Meloidogyne graminicola]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016836
|
GO:0005575_0.766|GO:0110165_0.759|GO:0005622_0.690|GO:0005737_0.637|GO:0003674_0.631|GO:0008150_0.598|GO:0016020_0.537|GO:0009987_0.530|GO:0003824_0.523
|
IPR000631+8-303_8-305_19-299_25-296_32-296+|IPR029056+8-304_11-301+
|
— |
PF01256+32-296+Carbohydrate_kinase
|
— |
PTHR12592+10-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
34691.800
|
7.401
|
4.000
|
25.237
|
9.464
|
45.110
|
54.890
|
13.880
|
11.356
|
52.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
907.698
|
1370.572
|
962.519
|
816.713
|
844.823
|
761.456
|
870.275
|
1234.299
|
628.634
|
926.958
|
799.105
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.738
|
-0.884
|
— | — | — |
0.203
|
0.595
|
-0.362
|
— | — | — | — | — |
No JSON data available for plots.