Hg_chrom9_TN10mRNA_17211
Organism: Heterodera glycines Gene Locus: chr9:3433230-3435086 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 0.965 | 1.032 | 1.958 | 1.82 | 1.232 | 0.442 | 1.201 | 1.116 | 1.151 | 1.125 | 1.541 | 1.577 | 0.546 | 1.693 | 0.717 | 0.68 | 0.629 | 0.672 | 0.514 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16259
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.436
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRCPRCLRRKARRKAV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.345
|
0.082
|
0.006
|
0.459
|
0.113
|
0.437
|
0.190
|
0.003
|
0.312
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000887
|
5.000
|
1.000
|
Hsc_gene_18856.t2
|
Hsc_gene_18856.t1
|
— |
O01738.2 Differentially expressed in FDCP 8 homolog [Caenorhabditis elegans]
|
KAI1717297.1 putative zinc-RING and/or ribbon domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0009987_0.909|GO:0071840_0.697|GO:0016043_0.688|GO:0005575_0.643|GO:0065007_0.637|GO:0110165_0.635|GO:0050789_0.630|GO:0050794_0.606|GO:0005622_0.595|GO:0051179_0.575|GO:0016020_0.522|GO:0043226_0.516
|
IPR002219+136-187_137-187_137-188_373-428_374-428+|IPR025258+234-435_234-438+|IPR036280+199-431+|IPR046349+127-188+|IPR047983+133-190+|IPR051366+197-445+
|
SM00109+137-187_373-428+|SM01175+234-438+
|
PF00130+137-188+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF13901+234-435+Rubicon_Homology_Domain
|
— |
PTHR12326+197-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;441-458
|
1.000
|
6-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
53504.190
|
6.683
|
1.500
|
34.716
|
10.699
|
52.838
|
47.162
|
18.122
|
16.594
|
41.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
671.106
|
537.848
|
647.459
|
531.633
|
482.135
|
523.736
|
627.889
|
844.853
|
667.065
|
862.457
|
778.717
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.154
|
-0.176
|
-0.172
|
— |
0.273
|
0.586
|
-0.285
|
— | — | — | — | — |
No JSON data available for plots.