Hg_chrom9_TN10mRNA_17214
Organism: Heterodera glycines Gene Locus: chr9:3435441-3441698 Feature type: polypeptideProtein Sequence
Length: 1,149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.113 | 1.376 | 0.87 | 0.15 | 0.783 | 2.276 | 0.839 | 1.131 | 0.735 | 0.764 | 0.607 | 1.126 | 1.185 | 1.724 | 1.51 | 1.305 | 0.728 | 0.752 | 0.335 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16260
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKRKRSR,KRSSDDPNSRRERGR,KRKRSRSPSGPMDPRKRFY,NSRRERGRGERADRDRPRERERDRGTNRSRSPRGRNGRGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.820
|
0.069
|
0.006
|
0.334
|
0.039
|
0.034
|
0.012
|
0.011
|
0.033
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000792
|
3.000
|
3.000
|
Hsc_gene_18834.t1;Hsc_gene_18855.t1;Hsc_gene_18855.t2
|
Hsc_gene_18855.t1;Hsc_gene_18855.t2
|
— |
Q22708.3 RNA-binding protein sym-2 [Caenorhabditis elegans]
|
KAF7636077.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0003674_0.731|GO:0005488_0.712|GO:0097159_0.659|GO:0003676_0.641|GO:0005575_0.616|GO:0110165_0.615|GO:0005622_0.554|GO:0003723_0.552|GO:0016020_0.550|GO:0043226_0.524|GO:0043229_0.503
|
IPR000504+4-77_5-73_476-547_1063-1137+|IPR012677+2-94_469-558+|IPR035979+5-84_468-553+|IPR050666+1-94+
|
SM00360+5-73_476-547_1063-1137+
|
— | — |
PTHR13976+1-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
86-472;510-964
|
3.000
|
1-85;473-509;965-1149
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
126069.090
|
9.995
|
35.000
|
23.151
|
8.877
|
51.523
|
48.477
|
13.664
|
9.487
|
55.265
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1251.319
|
2098.861
|
1428.217
|
1117.986
|
1012.342
|
905.083
|
1586.918
|
934.237
|
883.191
|
1405.760
|
1181.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.784
|
-1.046
|
-0.245
|
-0.175
|
— |
0.820
|
— |
0.907
|
— | — | — | — | — |
No JSON data available for plots.