SCN Proteipedia

Hg_chrom9_TN10mRNA_17217

Organism: Heterodera glycines Gene Locus: chr9:3446213-3451484 Feature type: polypeptide

Protein Sequence

Length: 895

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.026	0.831	0.874	0.771	0.968	0.974	0.904	1.173	1.266	1.631	0.711	1.84	0.714	0.881	1.3	0.958	0.934	1.067	0.258	0.624	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16262	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	RVLKRTK	92-112	0.998	—	—	—	—	0.000	—	—	0.221	0.822	0.080	0.310	0.102	0.166	0.147	0.051	0.093	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012747	1.000	1.000	Hsc_gene_18853.t1	Hsc_gene_18704.t1;Hsc_gene_18704.t2;Hsc_gene_18853.t1	—	P54889.2 Probable delta-1-pyrroline-5-carboxylate synthase [Caenorhabditis elegans]	KAI1717257.1 amino acid kinase family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004349\|GO:0004350\|GO:0005524\|GO:0005737\|GO:0006561\|GO:0016301\|GO:0016491\|GO:0016620	GO:0005575_0.838\|GO:0110165_0.838\|GO:0008150_0.799\|GO:0016020_0.722\|GO:0005622_0.721\|GO:0005737_0.676\|GO:0009987_0.655\|GO:0008152_0.612\|GO:0043226_0.600\|GO:0044238_0.594\|GO:0009058_0.587\|GO:0043229_0.580\|GO:0043227_0.564\|GO:0043231_0.536\|GO:0006520_0.520\|GO:0008652_0.515\|GO:0044237_0.507	IPR000965+442-854_445-849_451-844+\|IPR001048+169-412+\|IPR001057+207-221_253-281_293-314_328-355_386-406+\|IPR005715+169-437_170-436+\|IPR005766+121-879_162-873+\|IPR015590+444-741+\|IPR016161+444-853+\|IPR016162+452-852+\|IPR016163+664-812+\|IPR019797+384-401+\|IPR036393+158-438_170-432+\|IPR041744+162-433+	—	PF00171+444-741+Aldehyde_dehydrogenase_family\|PF00696+169-412+Amino_acid_kinase_family	G3DSA:3.40.1160.10:FF:000010+158-437+Delta-1-pyrroline-5-carboxylate_synthase\|G3DSA:3.40.309.10:FF:000015+664-812+Delta-1-pyrroline-5-carboxylate_synthase	PTHR11063+161-872+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	862-895	1.000	1-861	2h5g_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.730	97730.060	7.891	14.500	24.022	7.374	43.799	56.201	13.408	10.615	51.061

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	—	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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