Hg_chrom9_TN10mRNA_17219
Organism: Heterodera glycines Gene Locus: chr9:3460493-3462498 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.767 | 0.825 | 0.498 | 1.615 | 1.48 | 0.515 | 0.722 | 1.1 | 1.839 | 0.906 | 1.819 | 1.203 | 0.833 | 1.473 | 1.09 | 0.71 | 0.562 | 1.427 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16264
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.468
|
0.156
|
0.022
|
0.667
|
0.107
|
0.124
|
0.190
|
0.022
|
0.285
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004930
|
1.000
|
2.000
|
Hsc_gene_18851.t1;Hsc_gene_18851.t2
|
Hsc_gene_18851.t1;Hsc_gene_18851.t2
|
— |
A4FV68.1 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform [Bos taurus]
|
XP_046688375.1 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform [Homalodisca vitripennis]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000159|GO:0007165|GO:0019888
|
GO:0005575_0.907|GO:0110165_0.871|GO:0005622_0.843|GO:0005737_0.713|GO:0008150_0.660|GO:0009987_0.601|GO:0043226_0.586|GO:0043229_0.579|GO:0016020_0.563|GO:0003674_0.531|GO:0005488_0.502
|
IPR002554+36-470_74-469+|IPR011989+74-477+|IPR016024+78-442+
|
— |
PF01603+74-469+Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)
|
G3DSA:1.25.10.10:FF:000331+75-474+Phosphoprotein_phosphatase,_putative
|
PTHR10257+36-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;443-485
|
1.000
|
65-442
|
6voy_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
55557.890
|
6.213
|
-1.500
|
28.866
|
8.660
|
49.897
|
50.103
|
14.639
|
14.227
|
41.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.