Hg_chrom9_TN10mRNA_17223
Organism: Heterodera glycines Gene Locus: chr9:3471192-3474017 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.329 | 0.959 | 0.834 | 1.245 | 0.902 | 0.549 | 0.989 | 1.27 | 1.634 | 0.833 | 0.776 | 1.343 | 0.719 | 1.076 | 1.381 | 0.54 | 0.999 | 0.676 | 0.388 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16268
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RTQKRYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.664
|
0.300
|
0.029
|
0.499
|
0.221
|
0.236
|
0.119
|
0.050
|
0.092
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002271
|
3.000
|
1.000
|
Hsc_gene_18846.t1
|
Hsc_gene_18846.t1
|
— |
Q09535.1 Putative pachytene checkpoint protein 2 [Caenorhabditis elegans]
|
KAI1727902.1 ATPase family associated with various cellular activities (AAA) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.895|GO:0110165_0.884|GO:0005622_0.813|GO:0008150_0.811|GO:0009987_0.716|GO:0043226_0.633|GO:0043229_0.625|GO:0016020_0.588|GO:0008152_0.575|GO:0071840_0.546|GO:0044238_0.532|GO:0016043_0.524|GO:0043170_0.522|GO:0043227_0.508
|
IPR001270+211-229_325-339+|IPR003593+207-359+|IPR003959+211-355+|IPR003960+329-348+|IPR027417+155-377_172-443+|IPR044539+126-448+
|
SM00382+207-359+
|
PF00004+211-355+ATPase_family_associated_with_various_cellular_activities_(AAA)|PF22107+49-130+Pch2_N-terminal_domain
|
G3DSA:3.40.50.300:FF:001494+163-374+Pachytene_checkpoint_component_Pch2
|
PTHR45991+126-448+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-455
|
6lk0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
50437.590
|
5.691
|
-4.500
|
25.495
|
9.011
|
47.692
|
52.308
|
12.747
|
12.747
|
50.110
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.