Hg_chrom9_TN10mRNA_17231
Organism: Heterodera glycines Gene Locus: chr9:3488137-3491999 Feature type: polypeptideProtein Sequence
Length: 798
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.743 | 1.574 | 0.82 | 0.432 | 1.629 | 1.092 | 0.641 | 1.629 | 1.003 | 0.898 | 1.063 | 1.179 | 1.149 | 0.627 | 1.483 | 1.11 | 0.822 | 0.911 | 1.35 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16276
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRKNQLEERQRKARRQ,RRKDEKGNLVIQMGEKRRI,RKDEKGNLVIQMGEKRRIW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.343
|
0.193
|
0.031
|
0.584
|
0.311
|
0.476
|
0.354
|
0.019
|
0.315
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004263
|
2.000
|
1.000
|
Hsc_gene_18840.t1
|
Hsc_gene_18840.t1
|
— |
P22059.1 Oxysterol-binding protein 1 [Homo sapiens]
|
KAF7636048.1 Oxysterol-binding protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.799|GO:0110165_0.795|GO:0005622_0.752|GO:0008150_0.747|GO:0003674_0.662|GO:0005737_0.640|GO:0009987_0.637|GO:0016020_0.631|GO:0043226_0.600|GO:0005488_0.587|GO:0043229_0.579|GO:0043227_0.547|GO:0071944_0.533|GO:0043231_0.514
|
IPR000648+41-767_414-785+|IPR001849+39-136_40-138_41-135+|IPR011993+37-139+|IPR018494+514-524+|IPR037239+409-798+
|
SM00233+40-138+
|
PF00169+41-135+PH_domain|PF01237+414-785+Oxysterol-binding_protein
|
G3DSA:2.40.160.120:FF:000001+497-677+Oxysterol-binding_protein
|
PTHR10972+41-767+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
266-363;687-798
|
2.000
|
1-265;364-686
|
7v62_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
91938.950
|
7.622
|
13.000
|
31.830
|
12.155
|
55.639
|
44.361
|
17.544
|
14.286
|
46.366
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.