Hg_chrom9_TN10mRNA_17234
Organism: Heterodera glycines Gene Locus: chr9:3496462-3498462 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.119 | 0.972 | 0.277 | 2.807 | 1.166 | 0.318 | 1.07 | 1.188 | 0.903 | 1.742 | 2.045 | 1.04 | 0.514 | 0.982 | 0.726 | 0.745 | 0.608 | 1.028 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16279
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RLRKRAR,RKRARDK,KREAMLSETEVEEKKKRVA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.150
|
0.006
|
0.648
|
0.146
|
0.123
|
0.193
|
0.013
|
0.105
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004261
|
2.000
|
1.000
|
Hsc_gene_18837.t1
|
Hsc_gene_18837.t1
|
— |
O02108.1 Probable Hsp90 co-chaperone cdc37 [Caenorhabditis elegans]
|
KAI6196717.1 Hsp90 chaperone protein kinase-targeting subunit [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019901
|
GO:0005575_0.916|GO:0110165_0.916|GO:0005622_0.809|GO:0005737_0.606|GO:0003674_0.601|GO:0005488_0.598|GO:0005515_0.579|GO:0032991_0.552|GO:0008150_0.544|GO:0009987_0.509
|
IPR004918+1-372+|IPR013855+2-108_2-125+|IPR013873+296-373_303-372+|IPR013874+128-290_173-278+|IPR038189+154-283+
|
SM01069+296-373+|SM01070+128-290+|SM01071+2-125+
|
PF03234+2-108+Cdc37_N_terminal_kinase_binding|PF08564+303-372+Cdc37_C_terminal_domain|PF08565+173-278+Cdc37_Hsp90_binding_domain
|
— |
PTHR12800+1-372+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-155;347-374
|
1.000
|
156-346
|
2nca_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
43810.240
|
4.747
|
-18.000
|
40.642
|
9.091
|
59.626
|
40.374
|
18.449
|
22.193
|
37.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.