Hg_chrom9_TN10mRNA_17238
Organism: Heterodera glycines Gene Locus: chr9:3504074-3505415 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.094 | 0.912 | 0.865 | 0.94 | 1.366 | 0.485 | 1.567 | 1.254 | 1.652 | 1.14 | 1.475 | 1.567 | 1.025 | 1.088 | 0.672 | 0.668 | 0.807 | 0.965 | 0.738 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16283
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|endoplasmic_reticulum
|
— |
KGKKKAKGG,RRRRRMDTTVRAIRK
|
— | — | — | — | — | — |
0.001
|
— | — |
0.209
|
0.745
|
0.196
|
0.246
|
0.678
|
0.178
|
0.231
|
0.488
|
0.108
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004257
|
2.000
|
1.000
|
Hsc_gene_18828.t1
|
Hsc_gene_18828.t1
|
— |
O45503.1 Metaxin-1 homolog [Caenorhabditis elegans]
|
KAF7636037.1 GST C-terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001401
|
GO:0005575_0.929|GO:0110165_0.923|GO:0016020_0.878|GO:0005622_0.864|GO:0043226_0.823|GO:0043229_0.818|GO:0043227_0.784|GO:0005737_0.782|GO:0043231_0.775|GO:0008150_0.628|GO:0009987_0.586|GO:0005739_0.569|GO:0031090_0.532
|
IPR019564+19-142+|IPR033468+163-226+|IPR036282+161-229+|IPR050931+1-266+
|
— |
PF10568+19-142+Outer_mitochondrial_membrane_transport_complex_protein|PF17171+163-226+Glutathione_S-transferase,_C-terminal_domain
|
— |
PTHR12289+1-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
319-319
|
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
36604.590
|
8.826
|
12.000
|
26.646
|
12.539
|
45.455
|
54.545
|
15.987
|
10.658
|
43.260
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.