Hg_chrom9_TN10mRNA_17242
Organism: Heterodera glycines Gene Locus: chr9:3512703-3517857 Feature type: polypeptideProtein Sequence
Length: 808
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.792 | 1.036 | 0.743 | 0.683 | 1.341 | 1.174 | 0.663 | 1.361 | 1.018 | 1.288 | 1.163 | 1.31 | 1.341 | 0.69 | 1.086 | 1.485 | 0.893 | 0.881 | 0.762 | 0.4 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16287
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKRRRRER,KRKSAFCPSVANATTKKAK,RKSAFCPSVANATTKKAKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.790
|
0.073
|
0.004
|
0.249
|
0.159
|
0.107
|
0.056
|
0.016
|
0.095
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004932
|
1.000
|
2.000
|
Hsc_gene_18822.t1;Hsc_gene_18835.t1
|
Hsc_gene_18822.t1;Hsc_gene_18835.t1
|
— |
Q6DIK0.1 Integrator complex subunit 13 [Xenopus tropicalis]
|
KAI1710889.1 cell cycle and development regulator domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.783|GO:0110165_0.782|GO:0008150_0.773|GO:0005622_0.731|GO:0009987_0.724|GO:0016020_0.705|GO:0043226_0.691|GO:0043229_0.687|GO:0065007_0.677|GO:0050789_0.658|GO:0050794_0.641|GO:0043227_0.640|GO:0005737_0.631|GO:0043231_0.607|GO:0071840_0.593|GO:0016043_0.588|GO:0006996_0.538|GO:0000280_0.506|GO:0007049_0.506|GO:0022402_0.506|GO:0048285_0.506|GO:0005634_0.503|GO:0000278_0.501|GO:0051726_0.501|GO:0140014_0.501|GO:1903047_0.501
|
IPR019355+13-751_14-749+
|
— |
PF10221+14-749+Cell_cycle_and_development_regulator_Mat89Bb
|
— |
PTHR12955+13-751+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
153-243;800-808
|
2.000
|
1-152;244-799
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
90388.850
|
8.293
|
18.000
|
27.847
|
9.901
|
52.723
|
47.277
|
15.718
|
12.129
|
48.144
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.