Hg_chrom9_TN10mRNA_17245
Organism: Heterodera glycines Gene Locus: chr9:3523922-3526251 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.705 | 0.294 | 0.209 | 0.572 | 3.937 | 0.649 | 3.636 | 0.853 | 0.901 | 0.245 | 2.733 | 1.403 | 1.865 | 0.412 | 1.789 | 0.53 | 0.735 | 0.0 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16290
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.759
|
0.189
|
0.014
|
0.508
|
0.203
|
0.066
|
0.081
|
0.012
|
0.081
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001460
|
2.000
|
3.000
|
Hsc_gene_18820.t1;Hsc_gene_18820.t2;Hsc_gene_18820.t3
|
— | — | — |
KAI1723207.1 mediator complex subunit 23 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.971|GO:0005575_0.827|GO:0065007_0.815|GO:0050789_0.813|GO:0009987_0.803|GO:0050794_0.803|GO:0110165_0.705|GO:0008152_0.690|GO:0043170_0.690|GO:0005622_0.668|GO:0016020_0.647|GO:0043226_0.622|GO:0043229_0.610|GO:0019222_0.595|GO:0031323_0.590|GO:0044237_0.590|GO:0060255_0.574|GO:0043227_0.573|GO:0009058_0.552|GO:0009059_0.552|GO:0009889_0.552|GO:0010556_0.552|GO:0031326_0.552|GO:0032991_0.552|GO:0044249_0.552|GO:0010467_0.550|GO:0010468_0.550|GO:0043231_0.542|GO:0044238_0.510|GO:0048518_0.505|GO:0048522_0.503|GO:0005634_0.501
|
IPR021629+1-100_1-141+
|
— |
PF11573+1-100+Mediator_complex_subunit_23
|
— |
PTHR12691+1-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
140-495
|
1.000
|
1-139
|
9f76_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
54623.210
|
7.089
|
11.000
|
15.960
|
14.141
|
50.101
|
49.899
|
10.909
|
5.051
|
48.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.