Hg_chrom9_TN10mRNA_17246
Organism: Heterodera glycines Gene Locus: chr9:3526416-3527666 Feature type: polypeptideProtein Sequence
Length: 249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.541 | 0.934 | 0.876 | 1.108 | 0.402 | 0.927 | 0.622 | 0.402 | 1.339 | 1.574 | 0.791 | 1.654 | 1.45 | 1.236 | 0.328 | 0.861 | 1.119 | 1.034 | 0.618 | 0.945 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.174
|
0.766
|
0.179
|
0.217
|
0.321
|
0.088
|
0.061
|
0.229
|
0.234
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000191
|
7.000
|
4.000
|
Hsc_gene_10633.t1;Hsc_gene_10640.t1;Hsc_gene_10723.t2;Hsc_gene_10724.t2
|
Hsc_gene_10633.t1;Hsc_gene_10633.t2;Hsc_gene_10640.t1;Hsc_gene_10663.t1;Hsc_gene_10723.t1;Hsc_gene_10723.t2;Hsc_gene_10723.t3;Hsc_gene_10724.t1;Hsc_gene_10724.t2;Hsc_gene_23976.t1
|
— | — |
KAI1722427.1 tspO/MBR family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.944|GO:0005575_0.898|GO:0110165_0.894|GO:0009987_0.880|GO:0051179_0.791|GO:0051234_0.786|GO:0006810_0.785|GO:0016020_0.652|GO:0071944_0.646|GO:0003674_0.644|GO:0005886_0.627|GO:0005622_0.547|GO:0043226_0.519|GO:0043227_0.512
|
IPR004307+9-163_18-161_69-154+|IPR038330+8-164+
|
— |
PF03073+18-161+TspO/MBR_family
|
— |
PTHR10057+9-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
26698.240
|
6.428
|
0.000
|
14.859
|
10.040
|
35.341
|
64.659
|
7.631
|
7.229
|
56.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.