Hg_chrom9_TN10mRNA_17247
Organism: Heterodera glycines Gene Locus: chr9:3527840-3529125 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 0.714 | 0.869 | 1.059 | 1.536 | 1.225 | 0.488 | 1.877 | 1.062 | 1.522 | 0.931 | 1.606 | 1.043 | 0.394 | 1.254 | 1.804 | 0.727 | 0.362 | 1.05 | 0.602 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|endoplasmic_reticulum|golgi_apparatus
|
— |
KSKRKRRRPSH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.110
|
0.315
|
0.066
|
0.257
|
0.617
|
0.474
|
0.686
|
0.045
|
0.747
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004933
|
2.000
|
1.000
|
Hsc_gene_18812.t1
|
Hsc_gene_18812.t1
|
— |
Q93971.4 Transient receptor potential channel [Caenorhabditis elegans]
|
KAI1721782.1 ion transport protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0009987_0.921|GO:0005575_0.734|GO:0110165_0.734|GO:0003674_0.684|GO:0051179_0.680|GO:0016020_0.675|GO:0051234_0.664|GO:0006810_0.663|GO:0006811_0.595|GO:0055085_0.593|GO:0034220_0.592|GO:0006812_0.590|GO:0098655_0.589|GO:0005622_0.537|GO:0005215_0.525|GO:0005216_0.525|GO:0015075_0.525|GO:0015267_0.525|GO:0022803_0.525|GO:0022857_0.525|GO:0005261_0.520|GO:0008324_0.520|GO:0030001_0.502
|
IPR050927+1-199+
|
— | — | — |
PTHR13800+1-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
152-293
|
1.000
|
1-151
|
9b2a_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
33263.580
|
6.565
|
0.500
|
30.034
|
10.922
|
54.949
|
45.051
|
16.041
|
13.993
|
44.027
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.