Hg_chrom9_TN10mRNA_17250
Organism: Heterodera glycines Gene Locus: chr9:3539303-3542647 Feature type: polypeptideProtein Sequence
Length: 461
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 0.908 | 0.749 | 1.047 | 0.94 | 0.89 | 0.775 | 1.518 | 1.398 | 1.612 | 0.526 | 1.021 | 1.747 | 0.793 | 1.24 | 1.302 | 0.711 | 0.887 | 1.001 | 0.957 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16295
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKNKRRN,RRLYNYIITESVKRLLRR
|
22-57
|
0.960
|
9-62
|
0.947
|
— | — |
0.000
|
— | — |
0.154
|
0.439
|
0.158
|
0.182
|
0.896
|
0.186
|
0.213
|
0.170
|
0.162
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012757
|
1.000
|
1.000
|
Hsc_gene_18819.t1
|
Hsc_gene_18819.t1
|
— |
Q802V6.1 Monoacylglycerol lipase ABHD2 [Danio rerio]
|
KAK6107187.1 Alpha/beta hydrolase family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.911|GO:0009987_0.709|GO:0005575_0.672|GO:0110165_0.666|GO:0003674_0.632|GO:0008152_0.611|GO:0016020_0.602|GO:0044238_0.594|GO:0005622_0.541|GO:0006629_0.507|GO:0003824_0.506|GO:0005737_0.501
|
IPR000073+152-405+|IPR000952+327-368+|IPR029058+116-425_125-420+|IPR050960+56-428+
|
— |
PF00561+152-405+alpha/beta_hydrolase_fold
|
— |
PTHR10794+56-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
51886.690
|
7.251
|
6.000
|
22.343
|
13.883
|
43.167
|
56.833
|
12.581
|
9.761
|
47.505
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.