Hg_chrom9_TN10mRNA_17253
Organism: Heterodera glycines Gene Locus: chr9:3552429-3562856 Feature type: polypeptideProtein Sequence
Length: 1,268
(Signal peptide: 1-47)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.247 | 0.932 | 0.625 | 1.104 | 0.809 | 0.77 | 0.986 | 1.349 | 1.247 | 0.848 | 1.856 | 1.205 | 0.773 | 1.32 | 0.935 | 0.97 | 0.92 | 0.971 | 0.881 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16297
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RRRR,RKFLEGFEIPHRRREKVK
|
— | — |
31-60
|
0.988
|
1-47
|
— |
0.637
|
— |
2.000
|
0.067
|
0.078
|
0.018
|
0.275
|
0.275
|
0.556
|
0.351
|
0.078
|
0.860
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002552
|
2.000
|
2.000
|
Hsc_gene_18817.t1;Hsc_gene_18817.t2
|
Hsc_gene_18815.t1;Hsc_gene_18815.t2;Hsc_gene_18815.t3;Hsc_gene_18817.t1;Hsc_gene_18817.t2
|
— |
G5EFQ0.1 Receptor-type guanylate cyclase gcy-18 [Caenorhabditis elegans]
|
KAI6239704.1 Guanylate cyclase [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468|GO:0009190|GO:0016849|GO:0035556
|
GO:0008150_0.967|GO:0005575_0.849|GO:0110165_0.828|GO:0050896_0.749|GO:0032501_0.702|GO:0071944_0.696|GO:0016020_0.693|GO:0005886_0.674|GO:0009987_0.664|GO:0003674_0.569|GO:0005622_0.513
|
IPR000719+641-965_665-965+|IPR001054+1000-1201_1029-1219_1035-1218_1036-1172+|IPR001245+700-800+|IPR001828+179-522+|IPR011009+689-964+|IPR018297+1149-1172+|IPR028082+150-585+|IPR029787+996-1224_1022-1219+|IPR050401+236-1223+
|
SM00044+1000-1201+|SM00220+665-965+
|
PF00211+1029-1219+Adenylate_and_Guanylate_cyclase_catalytic_domain|PF01094+179-522+Receptor_family_ligand_binding_region|PF07714+700-800+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:3.30.70.1230:FF:000035+996-1224+Guanylate_cyclase
|
PTHR11920+236-1223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;1268-1268
|
1.000
|
23-1267
|
3et6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
142524.250
|
7.841
|
16.500
|
25.789
|
10.568
|
46.767
|
53.233
|
14.038
|
11.751
|
49.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |