Hg_chrom9_TN10mRNA_17261
Organism: Heterodera glycines Gene Locus: chr9:3587004-3591770 Feature type: polypeptideProtein Sequence
Length: 836
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 0.835 | 1.0 | 0.536 | 1.894 | 1.932 | 1.182 | 1.256 | 0.718 | 1.148 | 0.544 | 1.055 | 1.528 | 0.805 | 1.074 | 1.042 | 0.608 | 0.598 | 1.288 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16304
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.428
|
0.192
|
0.070
|
0.678
|
0.295
|
0.308
|
0.209
|
0.076
|
0.252
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012760
|
1.000
|
1.000
|
Hsc_gene_18807.t1
|
Hsc_gene_18807.t1
|
— |
P34308.4 Calpain clp-1 [Caenorhabditis elegans]
|
KAI1714548.1 calpain family cysteine protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0005575_0.801|GO:0110165_0.801|GO:0008150_0.797|GO:0003674_0.728|GO:0009987_0.696|GO:0005622_0.676|GO:0016020_0.571|GO:0043226_0.559|GO:0005737_0.552
|
IPR000169+305-316+|IPR001300+236-556_245-546_254-548_255-546+|IPR022682+582-674_763-825+|IPR022683+575-833+|IPR022684+239-262_305-321_341-366_371-394_396-423_524-545+|IPR033883+575-835+|IPR036213+576-834+|IPR038765+230-553+|IPR050420+84-832+
|
SM00230+236-556+|SM00720+575-833+
|
PF00648+255-546+Calpain_family_cysteine_protease|PF01067+582-674_763-825+Calpain_large_subunit,_domain_III
|
G3DSA:3.90.70.10:FF:000001+416-556+Calpain-1_catalytic_subunit
|
PTHR10183+84-832+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-152;657-715
|
2.000
|
153-656;716-836
|
1kfx_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
93684.160
|
4.353
|
-56.500
|
28.230
|
12.081
|
50.359
|
49.641
|
11.364
|
16.866
|
46.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.