Hg_chrom9_TN10mRNA_17272
Organism: Heterodera glycines Gene Locus: chr9:3626306-3628364 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 1.272 | 0.955 | 0.83 | 0.912 | 1.178 | 0.599 | 1.204 | 1.264 | 1.301 | 0.961 | 1.673 | 1.58 | 1.01 | 1.563 | 0.781 | 0.789 | 0.696 | 1.178 | 1.094 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16315
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRYKKSFAIENGRRKKNI,IRGKAALRRERRPWRRKLGTANGRR
|
— | — | — | — | — | — |
0.042
|
— | — |
0.067
|
0.088
|
0.052
|
0.141
|
0.064
|
0.086
|
0.331
|
0.051
|
0.269
|
0.914
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004939
|
2.000
|
1.000
|
Hsc_gene_18797.t1
|
Hsc_gene_18797.t1
|
— |
D2KBH9.1 Zinc metalloproteinase nas-8 [Steinernema carpocapsae]
|
KAH7731008.1 astacin protease precursor [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.763|GO:0005575_0.625|GO:0110165_0.622|GO:0003674_0.603|GO:0032501_0.507
|
IPR001506+123-310_131-309_153-171_206-224_225-242_256-271_295-308+|IPR003582+395-430_395-431_396-430+|IPR006026+128-261+|IPR024079+72-311+|IPR034035+134-307+
|
SM00235+128-261+|SM00254+395-431+
|
PF01400+131-309+Astacin_(Peptidase_family_M12A)|PF01549+395-430+ShK_domain-like
|
— |
PTHR10127+81-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-457
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
53025.050
|
9.427
|
20.500
|
27.133
|
13.348
|
47.484
|
52.516
|
16.411
|
10.722
|
44.420
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.