Hg_chrom9_TN10mRNA_17280
Organism: Heterodera glycines Gene Locus: chr9:3641238-3642943 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 0.866 | 1.161 | 0.642 | 0.975 | 0.682 | 1.045 | 1.596 | 0.946 | 1.33 | 1.088 | 1.408 | 1.256 | 0.818 | 1.14 | 0.722 | 0.872 | 1.088 | 1.227 | 1.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16323
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.415
|
0.396
|
0.124
|
0.629
|
0.248
|
0.261
|
0.145
|
0.168
|
0.147
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000377
|
6.000
|
2.000
|
Hsc_gene_13924.t1;Hsc_gene_21019.t1
|
— | — |
O70196.1 Prolyl endopeptidase [Rattus norvegicus]
|
KAH7700509.1 prolyl oligopeptidase family protein [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0008150_0.757|GO:0003674_0.748|GO:0005575_0.709|GO:0110165_0.700|GO:0003824_0.670|GO:0005622_0.605|GO:0005737_0.593|GO:0008152_0.576|GO:0016787_0.562|GO:0140096_0.534|GO:0008233_0.526
|
IPR001375+148-370+|IPR002470+132-150_159-183_187-206_217-237_272-287_293-315+|IPR002471+194-224+|IPR029058+98-365_102-368+|IPR051167+98-374+
|
— |
PF00326+148-370+Prolyl_oligopeptidase_family
|
G3DSA:3.40.50.1820:FF:000005+87-365+Prolyl_endopeptidase
|
PTHR42881+98-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
6jym_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
42440.590
|
7.947
|
8.000
|
28.191
|
13.564
|
44.947
|
55.053
|
15.957
|
12.234
|
48.670
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.