Hg_chrom9_TN10mRNA_17287
Organism: Heterodera glycines Gene Locus: chr9:3653798-3656687 Feature type: polypeptideProtein Sequence
Length: 475
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 0.685 | 0.957 | 0.218 | 1.018 | 1.619 | 0.827 | 1.474 | 1.404 | 1.252 | 0.957 | 1.61 | 1.696 | 0.85 | 1.246 | 1.293 | 0.828 | 0.797 | 0.162 | 0.991 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16328
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.314
|
0.117
|
0.015
|
0.605
|
0.121
|
0.359
|
0.341
|
0.022
|
0.408
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012776
|
1.000
|
1.000
|
Hsc_gene_18780.t1
|
Hsc_gene_18780.t1;Hsc_gene_18780.t2
|
— |
P70182.2 Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha [Mus musculus]
|
KAF7639771.1 PIPK domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046488|GO:0052742
|
GO:0005575_0.868|GO:0110165_0.863|GO:0008150_0.832|GO:0009987_0.765|GO:0003674_0.758|GO:0005622_0.735|GO:0016020_0.696|GO:0003824_0.618|GO:0005737_0.612|GO:0016740_0.598|GO:0008152_0.587|GO:0016772_0.572|GO:0071944_0.569|GO:0016301_0.565|GO:0016773_0.564|GO:0044238_0.559|GO:0001727_0.555|GO:0052742_0.555|GO:0005886_0.554|GO:0044237_0.549|GO:0043226_0.506|GO:0065007_0.505
|
IPR002498+25-368_53-369_109-366+|IPR023610+8-369+|IPR027483+191-384+|IPR027484+24-190+
|
SM00330+53-369+
|
PF01504+109-366+Phosphatidylinositol-4-phosphate_5-Kinase
|
— |
PTHR23086+8-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
374-475
|
1.000
|
1-373
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
53964.550
|
9.028
|
12.000
|
26.737
|
12.632
|
50.105
|
49.895
|
15.368
|
11.368
|
44.211
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.