Hg_chrom9_TN10mRNA_17288
Organism: Heterodera glycines Gene Locus: chr9:3656839-3659741 Feature type: polypeptideProtein Sequence
Length: 595
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 1.016 | 0.886 | 0.348 | 1.261 | 0.733 | 0.82 | 1.345 | 0.859 | 1.295 | 0.866 | 1.186 | 1.447 | 0.711 | 0.995 | 1.128 | 1.102 | 1.12 | 1.551 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16329
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
38-64
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.400
|
0.260
|
0.048
|
0.734
|
0.257
|
0.167
|
0.235
|
0.118
|
0.161
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012777
|
1.000
|
1.000
|
Hsc_gene_18779.t1
|
— | — |
Q96G03.4 Phosphopentomutase [Homo sapiens]
|
KAI1730574.1 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0005975|GO:0016868
|
GO:0003674_0.726|GO:0008150_0.719|GO:0005575_0.683|GO:0110165_0.670|GO:0003824_0.626|GO:0005622_0.581|GO:0008152_0.577|GO:0005737_0.557|GO:0044238_0.531|GO:0009987_0.519
|
IPR005841+143-157_232-251_302-317+|IPR005844+45-185+|IPR005845+225-320+|IPR005846+358-451+|IPR016055+33-197_227-320_310-461+|IPR016066+144-153+|IPR036900+470-574+
|
— |
PF02878+45-185+Phosphoglucomutase/phosphomannomutase,_alpha/beta/alpha_domain_I|PF02879+225-320+Phosphoglucomutase/phosphomannomutase,_alpha/beta/alpha_domain_II|PF02880+358-451+Phosphoglucomutase/phosphomannomutase,_alpha/beta/alpha_domain_III
|
— |
PTHR45745+2-594+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-595
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
66248.060
|
6.208
|
-3.000
|
25.714
|
12.269
|
47.563
|
52.437
|
13.277
|
12.437
|
51.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.