Hg_chrom9_TN10mRNA_17290
Organism: Heterodera glycines Gene Locus: chr9:3661291-3664342 Feature type: polypeptideProtein Sequence
Length: 631
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.516 | 1.106 | 1.21 | 0.601 | 1.004 | 0.975 | 0.924 | 1.03 | 0.88 | 1.199 | 0.648 | 1.585 | 1.629 | 1.25 | 1.132 | 1.155 | 0.935 | 0.864 | 1.585 | 1.025 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16331
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
— | — | — |
30-63
|
0.999
|
1-24
|
0.936
|
1.000
|
0.000
|
0.000
|
0.125
|
0.280
|
0.040
|
0.463
|
0.440
|
0.359
|
0.277
|
0.100
|
0.311
|
0.456
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012779
|
1.000
|
1.000
|
Hsc_gene_18776.t1
|
Hsc_gene_18776.t1
|
— |
P14000.1 Arylsulfatase [Hemicentrotus pulcherrimus]
|
KAI1728052.1 sulfatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.894|GO:0016020_0.784|GO:0003674_0.756|GO:0005622_0.688|GO:0005737_0.664|GO:0043226_0.648|GO:0008150_0.647|GO:0003824_0.640|GO:0071944_0.629|GO:0043227_0.620|GO:0043229_0.618|GO:0005886_0.615|GO:0043231_0.609|GO:0016787_0.574|GO:0016788_0.531|GO:0005773_0.525|GO:0008484_0.515
|
IPR000917+81-402+|IPR017850+77-464_79-609+|IPR024607+127-139_177-187+|IPR050738+74-596+
|
— |
PF00884+81-402+Sulfatase|PF14707+470-607+C-terminal_region_of_aryl-sulfatase
|
— |
PTHR42693+74-596+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
625-631
|
1.000
|
1-624
|
7all_AAA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
71370.440
|
5.135
|
-11.500
|
24.564
|
13.471
|
46.910
|
53.090
|
11.886
|
12.678
|
51.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |