Hg_chrom9_TN10mRNA_17292
Organism: Heterodera glycines Gene Locus: chr9:3671667-3673670 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.052 | 1.274 | 0.606 | 0.246 | 0.794 | 1.465 | 1.162 | 1.786 | 0.582 | 0.901 | 0.469 | 3.081 | 1.455 | 1.969 | 0.972 | 0.782 | 0.703 | 0.974 | 0.549 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16333
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPKTRGGPAE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.736
|
0.079
|
0.009
|
0.400
|
0.082
|
0.037
|
0.069
|
0.006
|
0.043
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012781
|
1.000
|
1.000
|
Hsc_gene_18774.t2
|
Hsc_gene_18774.t1;Hsc_gene_18774.t2
|
— |
Q9NX07.1 tRNA selenocysteine 1-associated protein 1 [Homo sapiens]
|
KAF7634446.1 RRM domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0003674_0.813|GO:0005488_0.728|GO:0005575_0.705|GO:0110165_0.693|GO:0097159_0.659|GO:0003676_0.636|GO:0008150_0.613|GO:0005622_0.593|GO:0003723_0.589
|
IPR000504+26-102_27-93_28-87_110-188_111-184_112-181+|IPR012677+12-102_103-204+|IPR035979+18-87_109-214+|IPR050825+17-200+
|
SM00360+27-93_111-184+
|
PF00076+28-87_112-181+RNA_recognition_motif
|
— |
PTHR47640+17-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;174-249
|
2.000
|
26-173;250-420
|
2dhg_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
45837.140
|
7.400
|
6.500
|
19.524
|
12.381
|
40.476
|
59.524
|
11.429
|
8.095
|
54.762
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.