Hg_chrom9_TN10mRNA_17297
Organism: Heterodera glycines Gene Locus: chr9:3683529-3687962 Feature type: polypeptideProtein Sequence
Length: 569
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.226 | 1.022 | 0.32 | 0.848 | 0.674 | 0.856 | 1.004 | 1.054 | 1.25 | 1.164 | 0.612 | 2.274 | 1.806 | 0.744 | 0.681 | 1.205 | 1.124 | 1.118 | 2.163 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16338
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
26-80
|
0.987
|
— | — |
0.000
|
— | — |
0.104
|
0.164
|
0.021
|
0.154
|
0.383
|
0.345
|
0.295
|
0.165
|
0.783
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012786
|
1.000
|
1.000
|
Hsc_gene_18769.t1
|
Hsc_gene_18768.t1;Hsc_gene_18769.t1
|
— |
Q9P2U7.1 Vesicular glutamate transporter 1 [Homo sapiens]
|
KAI1724048.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.959|GO:0009987_0.883|GO:0005575_0.860|GO:0110165_0.860|GO:0003674_0.810|GO:0006810_0.775|GO:0051179_0.775|GO:0051234_0.775|GO:0016020_0.761|GO:0055085_0.758|GO:0005215_0.714|GO:0022857_0.714|GO:0071944_0.702|GO:0005886_0.686|GO:0015711_0.533|GO:0005622_0.530|GO:0043226_0.527|GO:0043229_0.505
|
IPR011701+73-396+|IPR020846+65-514+|IPR036259+52-510_60-287_316-514+|IPR050382+66-519+
|
— |
PF07690+73-396+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000532+118-508+SLC_(SoLute_Carrier)_homolog
|
PTHR11662+66-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;541-569
|
1.000
|
2-540
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
61802.730
|
8.594
|
15.000
|
15.290
|
13.005
|
38.313
|
61.687
|
9.490
|
5.800
|
54.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.