Hg_chrom9_TN10mRNA_17301
Organism: Heterodera glycines Gene Locus: chr9:3701791-3705827 Feature type: polypeptideProtein Sequence
Length: 866
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.047 | 0.714 | 0.637 | 1.097 | 0.74 | 0.935 | 0.52 | 1.257 | 1.326 | 0.822 | 2.106 | 1.636 | 0.91 | 1.06 | 0.874 | 1.098 | 0.945 | 1.51 | 0.917 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16342
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
REPLKGGRKGRR,KKALVNKWRSKGNKKRGS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.078
|
0.107
|
0.019
|
0.188
|
0.259
|
0.446
|
0.381
|
0.006
|
0.681
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012789
|
1.000
|
1.000
|
Hsc_gene_18764.t1
|
Hsc_gene_18764.t1
|
— |
Q21219.2 Peptide transporter family 1 [Caenorhabditis elegans]
|
KAH7703334.1 Protein PEPT-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006857|GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.933|GO:0005575_0.879|GO:0110165_0.878|GO:0003674_0.856|GO:0009987_0.847|GO:0016020_0.842|GO:0051179_0.826|GO:0006810_0.819|GO:0051234_0.819|GO:0055085_0.728|GO:0071944_0.694|GO:0071705_0.688|GO:0005215_0.677|GO:0022857_0.677|GO:0005886_0.676|GO:0005622_0.568|GO:0042886_0.510
|
IPR000109+132-474_715-776+|IPR018456+121-145_204-216+|IPR036259+36-460_46-438_688-830+
|
— |
PF00854+132-474_715-776+POT_family
|
G3DSA:1.20.1250.20:FF:000049+53-471+Solute_carrier_family_15_member_2
|
PTHR11654+63-816+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52;843-866
|
1.000
|
53-842
|
7pn1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
97147.190
|
7.465
|
5.500
|
22.171
|
12.009
|
42.379
|
57.621
|
11.663
|
10.508
|
48.845
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.