Hg_chrom9_TN10mRNA_17306
Organism: Heterodera glycines Gene Locus: chr9:3717449-3718534 Feature type: polypeptideProtein Sequence
Length: 223
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 0.834 | 0.978 | 0.464 | 0.747 | 0.575 | 1.014 | 1.794 | 0.997 | 1.273 | 0.951 | 1.583 | 1.495 | 0.69 | 1.281 | 0.577 | 1.029 | 1.155 | 1.38 | 0.923 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16347
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.936
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.004
|
— | — |
0.417
|
0.490
|
0.118
|
0.487
|
0.389
|
0.340
|
0.245
|
0.470
|
0.272
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000377
|
6.000
|
2.000
|
Hsc_gene_13924.t1;Hsc_gene_21019.t1
|
Hsc_gene_13924.t1
|
— |
Q9QUR6.1 Prolyl endopeptidase [Mus musculus]
|
KAH7700509.1 prolyl oligopeptidase family protein [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0003674_0.731|GO:0008150_0.721|GO:0005575_0.704|GO:0110165_0.695|GO:0003824_0.631|GO:0008152_0.605|GO:0005622_0.601|GO:0005737_0.594|GO:0016787_0.549|GO:0043170_0.529|GO:0140096_0.524|GO:0008233_0.522
|
IPR001375+5-212+|IPR002470+5-29_33-52_63-83_118-133_139-161+|IPR002471+40-70+|IPR029058+2-198_5-210+|IPR051167+2-213+
|
— |
PF00326+5-212+Prolyl_oligopeptidase_family
|
— |
PTHR42881+2-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-223
|
6jym_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
24888.710
|
9.542
|
10.000
|
26.009
|
13.901
|
42.152
|
57.848
|
16.143
|
9.865
|
50.224
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
458.517
|
1214.438
|
545.336
|
441.612
|
367.951
|
321.727
|
325.095
|
536.902
|
50.559
|
560.694
|
342.065
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.384
|
-1.597
|
-0.196
|
-0.294
|
— | — |
0.634
|
-0.581
|
— | — | — | — |
6.707
|
No JSON data available for plots.