Hg_chrom9_TN10mRNA_17307
Organism: Heterodera glycines Gene Locus: chr9:3718693-3719933 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 1.215 | 1.493 | 0.257 | 0.746 | 1.148 | 0.888 | 0.746 | 1.99 | 1.008 | 1.131 | 1.317 | 1.244 | 0.574 | 0.914 | 0.853 | 0.734 | 1.357 | 0.0 | 0.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16348
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.808
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal|peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.669
|
0.234
|
0.041
|
0.582
|
0.148
|
0.282
|
0.211
|
0.172
|
0.113
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012794
|
1.000
|
1.000
|
Hsc_gene_18759.t1
|
Hsc_gene_18759.t1
|
— |
Q23680.1 Probable V-type proton ATPase subunit F [Caenorhabditis elegans]
|
KAF7634428.1 V-type proton ATPase subunit F [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0033180|GO:0034220|GO:0046961|GO:1902600
|
GO:0005575_0.789|GO:0110165_0.785|GO:0016020_0.696|GO:0008150_0.627|GO:0005622_0.604|GO:0005737_0.564|GO:0009987_0.563|GO:0043226_0.541|GO:0043229_0.536|GO:0043227_0.501
|
IPR005772+1-130_4-132+|IPR008218+11-121+|IPR036906+3-128_10-106+
|
— |
PF01990+11-121+ATP_synthase_(F/14-kDa)_subunit
|
G3DSA:3.40.50.10580:FF:000001+3-129+V-type_proton_ATPase_subunit_F
|
PTHR13861+5-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-134
|
9cfc_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
14619.760
|
6.467
|
0.000
|
26.119
|
7.463
|
46.269
|
53.731
|
13.433
|
12.687
|
52.985
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1955.300
|
1504.080
|
1527.078
|
1464.496
|
1963.136
|
1585.513
|
1248.630
|
2705.675
|
1489.828
|
2937.589
|
2317.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.208
|
-0.176
|
— |
0.391
|
-0.294
|
-0.334
|
0.666
|
-0.972
|
— | — | — | — | — |
No JSON data available for plots.