Hg_chrom9_TN10mRNA_17309
Organism: Heterodera glycines Gene Locus: chr9:3721733-3722233 Feature type: polypeptideProtein Sequence
Length: 108
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 0.431 | 1.347 | 1.277 | 0.463 | 1.187 | 0.772 | 0.463 | 2.469 | 1.502 | 0.842 | 2.179 | 1.029 | 0.356 | 1.134 | 1.058 | 1.063 | 0.701 | 0.0 | 1.362 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16350
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-25
|
— |
0.959
|
— |
0.000
|
0.319
|
0.298
|
0.059
|
0.462
|
0.434
|
0.180
|
0.300
|
0.012
|
0.054
|
0.508
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012796
|
1.000
|
1.000
|
Hsc_gene_18757.t1
|
Hsc_gene_18757.t1
|
— |
P49197.1 Small ribosomal subunit protein eS21 [Caenorhabditis elegans]
|
KAI1717913.1 ribosomal protein s21e domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.927|GO:0110165_0.917|GO:0005622_0.785|GO:0005737_0.758|GO:0043226_0.744|GO:0043229_0.726|GO:0005829_0.590|GO:0003674_0.588|GO:0008150_0.588|GO:0043228_0.531|GO:0043232_0.527|GO:0009987_0.524|GO:0016020_0.508|GO:0005840_0.505|GO:0022626_0.504
|
IPR001931+25-104_25-106+|IPR018279+35-43+|IPR038579+18-107+
|
— |
PF01249+25-104+Ribosomal_protein_S21e
|
G3DSA:3.30.1230.20:FF:000001+25-108+40S_ribosomal_protein_S21
|
PTHR10442+25-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
9cai_AV
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
12087.150
|
7.630
|
1.500
|
22.222
|
9.259
|
42.593
|
57.407
|
12.037
|
10.185
|
46.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
4973.723
|
1651.766
|
3290.960
|
4994.388
|
5179.729
|
4494.914
|
3300.242
|
2629.098
|
7004.382
|
6928.839
|
6961.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
1.459
|
0.712
|
— | — |
-0.434
|
-0.880
|
0.473
|
— | — | — | — | — |