Hg_chrom9_TN10mRNA_17314
Organism: Heterodera glycines Gene Locus: chr9:3736102-3738511 Feature type: polypeptideProtein Sequence
Length: 558
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 1.042 | 0.782 | 0.247 | 0.836 | 1.103 | 0.64 | 1.613 | 1.195 | 1.816 | 0.815 | 0.843 | 1.892 | 1.172 | 1.134 | 0.947 | 0.47 | 1.005 | 2.206 | 0.685 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16355
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KKRP,KEKKGTKHAMAKKRD
|
— | — | — | — |
1-24
|
0.941
|
0.999
|
1.000
|
1.000
|
0.071
|
0.071
|
0.009
|
0.238
|
0.872
|
0.301
|
0.423
|
0.039
|
0.342
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012800
|
1.000
|
1.000
|
Hsc_gene_18752.t1
|
Hsc_gene_18752.t1
|
— |
Q20086.2 Putative UDP-glucuronosyltransferase ugt-58 [Caenorhabditis elegans]
|
WDD39898.2 ODR1 [Meloidogyne graminicola];WFR52979.1 guanylyl cyclase GCY/ODR-1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.900|GO:0003674_0.703|GO:0009987_0.694|GO:0005575_0.606|GO:0008152_0.594|GO:0110165_0.590|GO:0003824_0.579|GO:0016020_0.560|GO:0016740_0.540|GO:0050896_0.514|GO:0016757_0.507|GO:0016758_0.507
|
IPR002213+44-442_124-525+|IPR050271+34-516+
|
— |
PF00201+124-525+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+34-516+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
556-558
|
1.000
|
1-555
|
8znm_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
63880.080
|
9.535
|
18.000
|
23.477
|
15.233
|
41.756
|
58.244
|
14.158
|
9.319
|
44.265
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1173.457
|
1161.478
|
1893.690
|
1071.758
|
1329.400
|
1418.652
|
2329.662
|
2517.356
|
220.003
|
573.121
|
421.785
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.477
|
-0.253
|
-0.713
|
0.279
|
— |
0.726
|
0.723
|
— | — | — | — | — |
9.357
|