SCN Proteipedia

Hg_chrom9_TN10mRNA_17315

Organism: Heterodera glycines Gene Locus: chr9:3738584-3739276 Feature type: polypeptide

Protein Sequence

Length: 158

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.589	0.736	0.46	0.218	0.527	0.811	0.377	1.899	1.828	2.566	0.863	1.489	2.286	0.609	0.904	1.356	0.519	0.959	0.974	1.117	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16356	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	—	58-78	0.995	—	—	—	—	0.000	—	—	0.204	0.209	0.033	0.223	0.658	0.479	0.460	0.068	0.220	0.117

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	—	KAI1696844.1 transmembrane protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.940\|GO:0110165_0.940\|GO:0008150_0.935\|GO:0016020_0.918\|GO:0009987_0.901\|GO:0005622_0.857\|GO:0043226_0.848\|GO:0043227_0.828\|GO:0005886_0.818\|GO:0071944_0.818\|GO:0051179_0.813\|GO:0051234_0.810\|GO:0006810_0.808\|GO:0071840_0.726\|GO:0016043_0.717\|GO:0051641_0.713\|GO:0051649_0.701\|GO:0006996_0.696\|GO:0033036_0.694\|GO:0070727_0.690\|GO:0008104_0.689\|GO:0044085_0.687\|GO:0016192_0.686\|GO:0046907_0.686\|GO:0022607_0.682\|GO:0048193_0.679\|GO:0033365_0.677\|GO:0051640_0.675\|GO:0007010_0.674\|GO:0030030_0.674\|GO:0051656_0.674\|GO:0070925_0.674\|GO:0120036_0.674\|GO:0000226_0.670\|GO:0001578_0.670\|GO:0005929_0.670\|GO:0006903_0.670\|GO:0007017_0.670\|GO:0007018_0.670\|GO:0010970_0.670\|GO:0030031_0.670\|GO:0030705_0.670\|GO:0030990_0.670\|GO:0031503_0.670\|GO:0032991_0.670\|GO:0035082_0.670\|GO:0035735_0.670\|GO:0042073_0.670\|GO:0042995_0.670\|GO:0044782_0.670\|GO:0048199_0.670\|GO:0051648_0.670\|GO:0051650_0.670\|GO:0060271_0.670\|GO:0061512_0.670\|GO:0097712_0.670\|GO:0098590_0.670\|GO:0099111_0.670\|GO:0120025_0.670\|GO:0120031_0.670\|GO:1905349_0.670	IPR024133+9-150_29-145+	—	PF14935+29-145+Transmembrane_protein_138	—	PTHR13306+9-150+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-158	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.688	18305.890	10.176	10.000	19.620	17.089	38.608	61.392	13.924	5.696	36.709

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	54.035	80.047	76.720	36.762	34.273	40.697	43.041	63.341	8.495	89.453	54.757

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.290	-1.260	-0.953	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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