Hg_chrom9_TN10mRNA_17319
Organism: Heterodera glycines Gene Locus: chr9:3747195-3752420 Feature type: polypeptideProtein Sequence
Length: 1,004
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.008 | 0.788 | 0.851 | 0.55 | 1.212 | 0.69 | 0.735 | 0.996 | 1.151 | 1.575 | 0.589 | 1.699 | 1.992 | 0.824 | 1.24 | 0.783 | 0.898 | 0.89 | 2.145 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16360
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RKVPTEAADREEREKQK
|
18-44
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.081
|
0.081
|
0.005
|
0.117
|
0.480
|
0.647
|
0.574
|
0.010
|
0.613
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012804
|
1.000
|
1.000
|
Hsc_gene_18748.t1
|
Hsc_gene_18748.t1
|
— |
Q0EEE2.1 Patched domain-containing protein 3 [Mus musculus]
|
KAF7634431.1 SSD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.838|GO:0110165_0.834|GO:0005886_0.789|GO:0016020_0.789|GO:0071944_0.789|GO:0008150_0.757|GO:0009987_0.597|GO:0005622_0.548|GO:0043226_0.527|GO:0051179_0.508
|
IPR000731+320-480_864-974+|IPR003392+69-974+|IPR051697+24-994+
|
— |
PF02460+69-974+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+781-979+PaTched_Related_family
|
PTHR10796+24-994+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
512-581;983-1004
|
2.000
|
1-511;582-982
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
114515.070
|
5.678
|
-10.000
|
23.904
|
14.741
|
40.936
|
59.064
|
11.952
|
11.952
|
45.618
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
343.326
|
475.521
|
411.668
|
229.561
|
413.364
|
670.758
|
242.756
|
304.834
|
230.039
|
298.851
|
269.360
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.439
|
-1.188
|
-0.732
|
0.816
|
0.714
|
-1.458
|
-1.246
|
— | — | — | — | — | — |
No JSON data available for plots.