Hg_chrom9_TN10mRNA_17324
Organism: Heterodera glycines Gene Locus: chr9:3757840-3759340 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.509 | 1.153 | 1.06 | 0.302 | 2.235 | 1.047 | 0.694 | 1.749 | 0.972 | 0.788 | 2.43 | 1.543 | 0.729 | 0.617 | 1.666 | 0.666 | 0.478 | 0.486 | 1.346 | 0.514 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKKR,KKRRK,KKDFHPSAWWNLKRKWE,KRKWEAEQKNDLEKRRQD,KKIMKTEVSDDSDIEKDKK,KDKKQRRKQKKEEKRKADKKHKHRRSSSRETSRKRKEGKHHRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.951
|
0.051
|
0.002
|
0.103
|
0.030
|
0.022
|
0.060
|
0.002
|
0.101
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012809
|
1.000
|
1.000
|
Hsc_gene_18743.t1
|
Hsc_gene_18743.t1
|
— |
Q9DA19.2 Corepressor interacting with RBPJ 1 [Mus musculus]
|
KAF7634429.1 Cir_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003714
|
GO:0008150_0.922|GO:0005575_0.674|GO:0110165_0.674|GO:0005622_0.663|GO:0043226_0.644|GO:0043229_0.627|GO:0016020_0.606|GO:0043227_0.557|GO:0005634_0.554|GO:0043231_0.554|GO:0009987_0.549|GO:0003674_0.523|GO:0005488_0.523|GO:0065007_0.516|GO:0031974_0.505|GO:0031981_0.505|GO:0043233_0.505|GO:0070013_0.505|GO:0050789_0.501
|
IPR019339+13-49+|IPR040014+2-342+|IPR041670+122-146+
|
SM01083+13-49+
|
PF10197+13-49+N-terminal_domain_of_CBF1_interacting_co-repressor_CIR|PF15288+122-146+Zinc_knuckle
|
— |
PTHR13151+2-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;140-343
|
1.000
|
4-139
|
8i0w_4
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
40703.130
|
10.137
|
23.000
|
46.939
|
9.621
|
63.557
|
36.443
|
27.697
|
19.242
|
35.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1857.889
|
1315.975
|
1650.558
|
1446.803
|
1653.151
|
1938.489
|
1591.578
|
2523.378
|
2347.668
|
1822.536
|
2047.593
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.161
|
0.244
|
-0.274
|
0.273
|
-0.521
|
— | — | — | — | — |
No JSON data available for plots.