Hg_chrom9_TN10mRNA_17326
Organism: Heterodera glycines Gene Locus: chr9:3761890-3762987 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 1.213 | 1.028 | 0.3 | 1.522 | 1.449 | 0.207 | 0.435 | 0.966 | 1.821 | 1.252 | 1.79 | 1.087 | 0.585 | 1.775 | 0.932 | 0.927 | 0.791 | 1.003 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16367
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRKQEVDTKASKGRKIRY,LNKRGKKRKQEVDTKASKGRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.910
|
0.122
|
0.004
|
0.271
|
0.054
|
0.028
|
0.073
|
0.024
|
0.014
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012811
|
1.000
|
1.000
|
Hsc_gene_18741.t1
|
Hsc_gene_18741.t1
|
— |
Q9VM95.1 Protein Aatf [Drosophila melanogaster]
|
KAI1718684.1 apoptosis antagonizing transcription factor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0005634
|
GO:0005575_0.835|GO:0110165_0.835|GO:0005622_0.798|GO:0008150_0.784|GO:0016020_0.768|GO:0043226_0.756|GO:0009987_0.748|GO:0043229_0.744|GO:0043227_0.692|GO:0043231_0.680|GO:0065007_0.580|GO:0050789_0.572|GO:0005634_0.555|GO:0050794_0.551
|
IPR012617+143-229+|IPR039223+151-229+
|
— |
PF08164+143-229+Apoptosis-antagonizing_transcription_factor,_C-terminal
|
— |
PTHR15565+151-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
27036.150
|
9.609
|
6.000
|
32.609
|
7.826
|
55.652
|
44.348
|
17.826
|
14.783
|
39.565
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
970.977
|
1283.210
|
843.554
|
808.079
|
924.045
|
663.606
|
714.197
|
748.312
|
1076.845
|
1196.013
|
1144.941
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.835
|
-0.804
|
— |
0.161
|
-0.463
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.