Hg_chrom9_TN10mRNA_17327
Organism: Heterodera glycines Gene Locus: chr9:3763125-3763832 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.028 | 1.507 | 0.762 | 1.105 | 1.275 | 0.46 | 0.552 | 1.596 | 1.792 | 1.256 | 1.3 | 1.535 | 0.212 | 0.451 | 0.947 | 0.453 | 1.172 | 0.425 | 1.137 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16368
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.291
|
0.123
|
0.469
|
0.357
|
0.489
|
0.693
|
0.098
|
0.106
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012812
|
1.000
|
1.000
|
Hsc_gene_18740.t1
|
Hsc_gene_18740.t1
|
— |
O17901.1 Probable coatomer subunit zeta [Caenorhabditis elegans]
|
KAI1720242.1 clathrin adaptor complex small chain domain-containing protein [Ditylenchus destructor];KAI1727855.1 clathrin adaptor complex small chain domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006890|GO:0030126
|
GO:0005575_0.917|GO:0110165_0.907|GO:0005622_0.852|GO:0016020_0.733|GO:0005737_0.688|GO:0008150_0.647|GO:0043226_0.643|GO:0043229_0.621|GO:0043227_0.600|GO:0009987_0.590|GO:0043231_0.586|GO:0071944_0.552|GO:0005886_0.547
|
IPR011012+12-148+|IPR022775+12-148+|IPR039652+7-180+
|
— |
PF01217+12-148+Clathrin_adaptor_complex_small_chain
|
G3DSA:3.30.450.60:FF:000013+4-150+Coatomer_subunit_zeta
|
PTHR11043+7-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
9qpq_P
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
20561.760
|
4.547
|
-7.000
|
26.519
|
11.050
|
45.304
|
54.696
|
11.602
|
14.917
|
44.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1432.539
|
400.281
|
864.081
|
1381.437
|
1616.535
|
1957.098
|
846.027
|
1094.539
|
1489.426
|
2090.287
|
1832.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
1.650
|
0.785
|
0.194
|
0.291
|
-1.205
|
-0.943
|
— | — | — | — | — | — |
No JSON data available for plots.