Hg_chrom9_TN10mRNA_17329
Organism: Heterodera glycines Gene Locus: chr9:3766804-3769039 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 1.233 | 0.578 | 0.244 | 1.355 | 1.812 | 0.715 | 0.353 | 0.628 | 1.146 | 0.535 | 1.871 | 0.589 | 1.427 | 1.37 | 1.565 | 1.159 | 1.017 | 0.272 | 0.208 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16370
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— |
RHRR
|
— | — |
13-47
|
0.998
|
— | — |
0.000
|
— | — |
0.181
|
0.752
|
0.053
|
0.203
|
0.432
|
0.269
|
0.276
|
0.632
|
0.116
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012814
|
1.000
|
1.000
|
Hsc_gene_18738.t2
|
Hsc_gene_18738.t1;Hsc_gene_18738.t2
|
— | — |
KAI1719350.1 peroxisomal membrane anchor protein (Pex14p) conserved region domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005778|GO:0016560
|
GO:0005575_0.920|GO:0110165_0.913|GO:0005622_0.841|GO:0016020_0.830|GO:0043226_0.781|GO:0043229_0.766|GO:0005737_0.755|GO:0043227_0.737|GO:0043231_0.713|GO:0008150_0.654|GO:0009987_0.610|GO:0005777_0.540|GO:0042579_0.540
|
IPR006785+27-70+|IPR025655+4-272+|IPR036388+18-77+
|
— |
PF04695+27-70+Pex14_N-terminal_domain
|
— |
PTHR23058+4-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-97;136-283
|
1.000
|
98-135
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
30616.310
|
5.473
|
-2.000
|
22.261
|
3.887
|
52.650
|
47.350
|
10.954
|
11.307
|
56.184
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
748.591
|
283.598
|
644.823
|
484.235
|
505.411
|
906.617
|
1059.676
|
772.991
|
191.712
|
1384.795
|
873.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.955
|
0.635
|
-0.304
|
— |
0.858
|
0.236
|
— |
0.596
|
— | — | — | — | — |
No JSON data available for plots.