SCN Proteipedia

Hg_chrom9_TN10mRNA_17330

Organism: Heterodera glycines Gene Locus: chr9:3769367-3776478 Feature type: polypeptide

Protein Sequence

Length: 1,313

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.974	0.797	0.789	0.315	1.079	2.285	0.997	1.637	0.694	0.916	0.704	0.896	1.037	1.23	1.383	1.338	0.949	0.865	0.41	0.448	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16371	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.301	0.150	0.036	0.584	0.206	0.174	0.201	0.009	0.603	0.057

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012815	1.000	1.000	Hsc_gene_18737.t1	Hsc_gene_18737.t1;Hsc_gene_18737.t2	—	Q07157.3 Tight junction protein ZO-1 [Homo sapiens]	KAI1713574.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.916\|GO:0110165_0.911\|GO:0008150_0.831\|GO:0009987_0.773\|GO:0016020_0.767\|GO:0005622_0.763\|GO:0065007_0.668\|GO:0003674_0.643\|GO:0071944_0.640\|GO:0043226_0.629\|GO:0005886_0.606\|GO:0005488_0.597\|GO:0030054_0.573\|GO:0043229_0.572\|GO:0050789_0.564\|GO:0050794_0.533\|GO:0032501_0.530\|GO:0005515_0.528\|GO:0032502_0.517\|GO:0048856_0.517\|GO:0005737_0.501	IPR001478+339-407_340-414_340-415_348-418_428-509_431-509_433-506_449-506_705-783_706-775_707-782_714-786+\|IPR008144+1008-1120+\|IPR008145+938-1123_1015-1120+\|IPR027417+954-1131_1016-1130+\|IPR036034+324-422_334-419_429-509_448-505_686-798_695-787+	SM00072+938-1123+\|SM00228+348-418_428-509_714-786+	PF00595+340-414_449-506_707-782+PDZ_domain\|PF00625+1015-1120+Guanylate_kinase	—	PTHR13865+314-424+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-338;501-680;853-918;1138-1313	3.000	339-500;681-852;919-1137	2jwe_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.868	143727.860	8.572	29.500	25.514	9.063	53.008	46.992	14.699	10.815	52.704

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	saddlebrown	3218.639	16410.844	2923.226	2336.053	1520.172	2002.739	1533.281	3103.071	1088.244	2079.345	1654.587

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.718	-2.950	-0.215	-0.652	0.413	-0.376	0.528	-0.875	—	—	—	—	—

No JSON data available for plots.

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