Hg_chrom9_TN10mRNA_17331
Organism: Heterodera glycines Gene Locus: chr9:3779227-3781852 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 0.865 | 0.888 | 0.642 | 0.93 | 1.252 | 0.664 | 1.047 | 1.395 | 1.728 | 0.423 | 1.505 | 1.809 | 1.029 | 1.139 | 1.429 | 0.686 | 0.775 | 1.252 | 0.752 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16372
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
nucleus
|
KKCEQMTEEREPLLIRKSK
|
— | — | — | — | — |
0.852
|
0.245
|
1.000
|
— |
0.057
|
0.037
|
0.003
|
0.271
|
0.216
|
0.758
|
0.595
|
0.053
|
0.794
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012816
|
1.000
|
1.000
|
Hsc_gene_18736.t1
|
Hsc_gene_18736.t1
|
— |
Q8CE08.1 Prostatic acid phosphatase [Mus musculus]
|
KAI1718749.1 histidine phosphatase superfamily (branch 2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.788|GO:0005575_0.787|GO:0110165_0.781|GO:0009987_0.725|GO:0016020_0.686|GO:0003674_0.659|GO:0005622_0.620|GO:0043226_0.579|GO:0043227_0.564|GO:0043229_0.556|GO:0003824_0.544|GO:0005737_0.525|GO:0016787_0.503
|
IPR000560+25-320+|IPR029033+25-363_25-367+|IPR050645+7-350+
|
— |
PF00328+25-320+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+7-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
48533.740
|
5.627
|
-4.500
|
20.930
|
12.791
|
43.721
|
56.279
|
10.465
|
10.465
|
46.744
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
696.819
|
259.947
|
513.779
|
581.357
|
506.511
|
762.633
|
1551.562
|
674.008
|
260.731
|
1034.361
|
702.806
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
1.024
|
0.287
|
-0.230
|
0.605
|
1.035
|
-0.283
|
1.346
|
— | — | — | — | — |