Hg_chrom9_TN10mRNA_17332
Organism: Heterodera glycines Gene Locus: chr9:3781996-3783672 Feature type: polypeptideProtein Sequence
Length: 369
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 1.387 | 0.542 | 0.748 | 0.994 | 0.973 | 0.71 | 0.949 | 0.903 | 1.392 | 0.411 | 1.435 | 1.957 | 1.407 | 1.161 | 1.626 | 0.489 | 0.985 | 1.251 | 0.478 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16373
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
24-64
|
0.997
|
— | — |
0.021
|
— | — |
0.206
|
0.066
|
0.017
|
0.190
|
0.448
|
0.429
|
0.326
|
0.045
|
0.691
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012817
|
1.000
|
1.000
|
Hsc_gene_18735.t1
|
Hsc_gene_18735.t1
|
— |
A2AJ76.1 Hemicentin-2 [Mus musculus]
|
KAH7678449.1 immunoglobulin domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.843|GO:0110165_0.840|GO:0008150_0.761|GO:0016020_0.666|GO:0071944_0.635|GO:0009987_0.630|GO:0005886_0.548|GO:0032501_0.522
|
IPR003598+60-154_181-247+|IPR003599+54-163_175-259+|IPR007110+45-163_167-251+|IPR013098+182-249+|IPR013783+46-162_163-257+|IPR036179+57-251_83-162+
|
SM00408+60-154_181-247+|SM00409+54-163_175-259+
|
PF07679+182-249+Immunoglobulin_I-set_domain
|
— |
PTHR10075+87-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
74-130
|
2.000
|
1-73;131-369
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
40892.650
|
6.816
|
1.500
|
19.241
|
12.195
|
43.360
|
56.640
|
10.298
|
8.943
|
52.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
152.111
|
575.319
|
350.740
|
127.134
|
89.754
|
103.218
|
123.485
|
155.587
|
116.178
|
6.388
|
53.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.945
|
-2.315
|
-1.354
|
-0.534
|
— | — |
0.491
|
— | — | — | — | — | — |
No JSON data available for plots.