Hg_chrom9_TN10mRNA_17334
Organism: Heterodera glycines Gene Locus: chr9:3786593-3789004 Feature type: polypeptideProtein Sequence
Length: 550
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.29 | 0.93 | 1.091 | 0.502 | 1.121 | 1.072 | 0.844 | 0.818 | 1.455 | 1.351 | 1.129 | 1.711 | 0.808 | 0.455 | 0.742 | 0.857 | 0.864 | 1.24 | 0.14 | 0.695 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16375
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.383
|
0.135
|
0.047
|
0.658
|
0.232
|
0.212
|
0.228
|
0.004
|
0.144
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012818
|
1.000
|
1.000
|
Hsc_gene_18734.t1
|
Hsc_gene_18734.t1
|
— |
A8X6I9.1 T-complex protein 1 subunit theta [Caenorhabditis briggsae]
|
KAI1715616.1 TCP-1/cpn60 chaperonin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.851|GO:0110165_0.847|GO:0005622_0.772|GO:0005737_0.710|GO:0008150_0.641|GO:0009987_0.542|GO:0005829_0.527
|
IPR002194+43-55+|IPR002423+42-528+|IPR012721+11-535_20-527+|IPR017998+25-527_40-56_62-80_92-111_375-397_409-421+|IPR027409+216-380_219-372+|IPR027410+150-407_156-407+|IPR027413+24-528_31-524+
|
— |
PF00118+42-528+TCP-1/cpn60_chaperonin_family
|
G3DSA:3.50.7.10:FF:000008+220-372+T-complex_protein_1_subunit_theta
|
PTHR11353+25-527+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
531-550
|
1.000
|
1-530
|
3iyg_Q
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
59637.630
|
5.730
|
-4.500
|
25.455
|
7.091
|
44.909
|
55.091
|
12.727
|
12.727
|
51.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4262.112
|
3024.220
|
2838.942
|
6970.591
|
7172.996
|
5391.396
|
4013.094
|
2924.210
|
2016.026
|
5008.928
|
3726.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.321
|
1.068
|
1.405
|
— |
-0.397
|
-0.415
|
-0.989
|
0.600
|
— | — | — | — | — |
No JSON data available for plots.