Hg_chrom9_TN10mRNA_17336
Organism: Heterodera glycines Gene Locus: chr9:3792174-3793243 Feature type: polypeptideProtein Sequence
Length: 275
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.846 | 0.793 | 1.505 | 1.212 | 0.839 | 0.476 | 1.636 | 0.566 | 1.376 | 0.551 | 2.353 | 2.02 | 1.329 | 1.855 | 0.935 | 0.715 | 0.992 | 0.839 | 0.214 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16377
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.800
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
55-75
|
0.974
|
31-66
|
1.000
|
— | — |
0.021
|
— | — |
0.030
|
0.055
|
0.023
|
0.160
|
0.196
|
0.180
|
0.366
|
0.005
|
0.168
|
0.915
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012820
|
1.000
|
1.000
|
Hsc_gene_18731.t1
|
Hsc_gene_18731.t1
|
— | — |
KAI1716687.1 interleukin-17 domain-containing protein [Ditylenchus destructor]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005125|GO:0005576
|
GO:0008150_0.942|GO:0005575_0.905|GO:0110165_0.901|GO:0065007_0.891|GO:0050789_0.879|GO:0050896_0.819|GO:0048518_0.780|GO:0009628_0.697|GO:0040011_0.679|GO:0040012_0.677|GO:0040017_0.677|GO:0070482_0.675|GO:0005576_0.606
|
IPR010345+177-250+|IPR029034+156-255_158-251+
|
— |
PF06083+177-250+Interleukin-17
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
31554.530
|
7.934
|
7.500
|
27.636
|
12.364
|
45.455
|
54.545
|
16.000
|
11.636
|
47.636
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
15.672
|
12.416
|
14.799
|
57.097
|
23.203
|
13.056
|
45.329
|
16.947
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.066
|
2.065
|
-1.328
|
— |
1.809
|
— |
1.563
|
— |
6.692
|
— | — | — |
No JSON data available for plots.